BAC Information

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BAC

Clone NameMSMg01-095N18
Chromosome16 (Build37)
Map Location 48,571,938 - 48,761,805
singlet/doubletdoublet
Overlap geneMorc1, Trat1, EG667501
Upstream geneLOC628776, EG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023
Downstream geneRetnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061, EG216818, LOC628903, Ift57
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095N18.T7 (MSMg01no095_n18.b1)MSMg01-095N18.TJ (MSMg01no095_n18.g1)
ACCAG312674AG312675
length672691
length of high quality
(start - end)
323 (5 - 327)290 (56 - 345)
definitionCHROMAT_FILE: MSMg01no095_n18.b1 PHD_FILE: MSMg01no095_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:00 2005CHROMAT_FILE: MSMg01no095_n18.g1 PHD_FILE: MSMg01no095_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,761,489 - 48,761,805)(48,571,938 - 48,572,227)
sequence
AAGATCCGCGGAATTCATTTACTTATTACTTTTGAGACAGACCCCTACTA
CATATCCCAGGGTTGCCCAGACTCCTAAAAATTCTAGCATCTTAATCTCT
CAAATATTGCACTCCCTGATGTGAACTGTCACCTCAGCTAAATGCAGTGG
TTTGAATCATGACCTTAGCTGAAATAAAACTGTATAGTAAGCCGTCCTAT
CACAAACACATCTACTTTTGTTTCCAGGAAGCTCGGGATGCCCCTTCTTC
CTCTGGGGACTTCTAGCCTTCTTGGGCTTGGCTCTGGTTATATCGTTGAT
CTTCAATATTTCCCACTATGTAGAGAATCAGAGACGACGCACGACCTTCT
GGCAAATCACTGTATGGTACCTGCTCAAACGCAGACCCTGGAAACCCTCG
GGCGTACATACTGTTATGAGATGTCGTTAACAGCTTGTTGTAACCGTGAG
AGATCTTGGATTGTTTTCACCCTGAGGGCTCCCTCAATTTAAGAATGAAT
TCACTTCGGAGATATGAGACAAAGTTCCCAAACTTAGCTTTAAGACTGTC
TCAGGATTGACAGCTGATAGGAGTTATTCCTGTTAAACGGGCTTCTCTAA
TTGACCAAATCAGGGCACGGCAGTCTCTTTGATATGGTGATAAAGGCGAA
GAGCTGCTCCCTAAGGCTCTAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAATGCCTCTTGAAAGGAAAAGGCAGCAATAGCTTTCTATAGTTTT
GCAGCGCTGATATGGATACACACAAAAAAATTGAACTTAAATAATCTTGC
AGTTCCCGTGTTGGCCATTGTCGCTGTAAATGTTGAGCAAAGGCGGCTTG
CAGGATTTTTAACTGTGGTTTTAAAGTTAAAATGACCTATCTGAAGAGAA
CTTTGTAATGGAGAATATGAACACATTTTCCCATCTAGAATTTAGTCTAT
TTAATGTGCCATTATTGTGTAGGATGCTGGTTTCAAATCTGTGTCTCTCT
TGTTTGACCCACGCTCTAGAAAGTGTATTGATTTATCACAAGAACTTTCC
AACCCCCTTCCACCAACATCTATGTTCTGAAATTTATAGCACCTAAAGAC
CTATTGTCTTATAAGAGGCTATTATTCTCATTGTGGCCGAAATATTTTAC
TTTCTTACTCTGGCTACAGAGATCTCATTTCTCCATGGTGCTGCATTATT
CTTCCAAGATGGAAAATACATAACGTGTTCACCCTTGTTGGCCCCACGTT
CCTGCGTATTGATGAGAGGTTAGAATAACTGCTTGTGACCAACTCATCCA
GAATCCTTGCTGAAGGCAGGCATGGTGGCCTGCCTTTGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_n18.b1 MSMg01no095_n18.b1 CHROMAT_FILE:
MSMg01no095_n18.b1 PHD_FILE: MSMg01no095_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:00 2005
         (323 letters)



>mm_chr16_48761283_48762005
          Length = 723

 Score =  582 bits (301), Expect = e-171
 Identities = 313/317 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcatttacttattacttttgagacagacccctactacatatcccagggttgcccag 66
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gaattcatttacttaataattttgagacagacccctactacatatcccagggttgcccag 464

                                                                       
Query: 67  actcctaaaaattctagcatcttaatctctcaaatattgcactccctgatgtgaactgtc 126
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 actcctaaaaattctagtatcttaatctctcaaatattgcactccctgatgtgaactgtc 404

                                                                       
Query: 127 acctcagctaaatgcagtggtttgaatcatgaccttagctgaaataaaactgtatagtaa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 acctcagctaaatgcagtggtttgaatcatgaccttagctgaaataaaactgtatagtaa 344

                                                                       
Query: 187 gccgtcctatcacaaacacatctacttttgtttccaggaagctcgggatgccccttcttc 246
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 343 gccgtcctatcacaaacacatctacttttgtttccaggaagctctggatgccccttcttc 284

                                                                       
Query: 247 ctctggggacttctagccttcttgggcttggctctggttatatcgttgatcttcaatatt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ctctggggacttctagccttcttgggcttggctctggttatatcgttgatcttcaatatt 224

                            
Query: 307 tcccactatgtagagaa 323
           |||||||||||||||||
Sbjct: 223 tcccactatgtagagaa 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no095_n18.g1 MSMg01no095_n18.g1 CHROMAT_FILE:
MSMg01no095_n18.g1 PHD_FILE: MSMg01no095_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:00 2005
         (290 letters)



>mm_chr16_48571738_48572427
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgcctcttgaaaggaaaaggcagcaatagctttctatagttttgcagcgctgatatgg 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgcctcttgaaaggaaaaagcagcaatagctttctatagttttgcagcgctgatatgg 260

                                                                       
Query: 61  atacacacaaaaaaattgaacttaaataatcttgcagttcccgtgttggccattgtcgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacacacaaaaaaattgaacttaaataatcttgcagttcccgtgttggccattgtcgct 320

                                                                       
Query: 121 gtaaatgttgagcaaaggcggcttgcaggatttttaactgtggttttaaagttaaaatga 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaaatgttgagcaaaggcagcttgcaggatttttaactgtggttttaaagttaaaatga 380

                                                                       
Query: 181 cctatctgaagagaactttgtaatggagaatatgaacacattttcccatctagaatttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctatctgaagagaactttgtaatggagaatatgaacacattttcccatctagaatttag 440

                                                             
Query: 241 tctatttaatgtgccattattgtgtaggatgctggtttcaaatctgtgtc 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctatttaatgtgccattattgtgtaggatgctggtttcaaatctgtgtc 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)