BAC Information

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BAC

Clone NameMSMg01-095O22
Chromosome16 (Build37)
Map Location 45,923,011 - 45,923,319
singlet/doubletsinglet
Overlap genenone
Upstream geneCd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418
Downstream genePlcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095O22.T7 (MSMg01no095_o22.b1)MSMg01-095O22.TJ (MSMg01no095_o22.g1)
ACCAG312730AG312731
length698820
length of high quality
(start - end)
316 (42 - 357)---
definitionCHROMAT_FILE: MSMg01no095_o22.b1 PHD_FILE: MSMg01no095_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:06 2005CHROMAT_FILE: MSMg01no095_o22.g1 PHD_FILE: MSMg01no095_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAA
TTCTTAAATTACCATGAAAACCAATGAAGTGAAAATAACTAAAGTTTAAC
AATGCATTTCTATGGGTTTGCTGAAACATATTGCATAAATAAATAGCTAT
CATACTTGTTATAGTCCACACCGTAGGGCTAGTGATCCTCATGTGCACAT
GTGTGCATCTGAGTGTGGAGGTATCTGTGTGTGTTTCTTGAGCCAGGCTT
TCTCACTGGACGTGAGCTCAGTGATTTGGCTGGTTGGCTGACCAGCAATC
CTCTTGTGAGCTCCTCTTATGTCTACGTCCAAAGCATTGGGATGATTGGC
ATGTATTATCATACCCGGCTTTTATCCAGATACTGAGATCAAACCAAGGC
CTACATACTTAAGTAGCAAGCAAGCACTCTGCCCTGAGAGCCACCTTCTC
ATCCCCTGTGACATCAGTCTTTGATCAAACTAAAGGAATTGCATCAATTT
CCCAACCGTCTACCCTAGATATTTTCTGAATGTTGTGGCTAAATATCGAC
GCAATGTGACGATAAATCTATACACAGCAAATCAAAAAAAAGAGCTCTCT
AAAGCTTCGTGCCCTAGACTGTGTTCCATATCCAGAGCGCAGAGGACTCC
TTGCATGTGTTTTTAGAGGTGCCACTTCTCCGCCTGGGAAACTTGGGA
NNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCNGGNNNNNNNAAGTCCT
CGTCTGTCCAGAANTTCGGAGGNNNGCCAGAAGAANGNNCGGCGTCTTAA
AGAGACCTAGAGAAGGATCCGCTCTCTTCTAACGAGAGTAGGTCNAACNC
CATGTGTCTTCACCATGTGAGTCTTACCCCAACAACAGGGGAGACTATCT
CAGCTGACATCACTCTGCCAATCGGCCCGAGTCTGTGGAACCTGCAAGAA
GCTGCACCCCACTACCAGAAGTATTTTGGGGGAGTTTCTCTCTATGGAGT
CCCAACAAATGGAGCTCACTTATGCAATGTAAGGCACACCAATATATGTG
TGTCATTCATTAGCGAAGAATCCTTCATCATGTTTCCTTTCACGTGCTTG
GTTTAGCAGAACATTTTTTTTTTCCCCCCCCCCCCGCGAGAGGTTTCCTT
TGCAAGTCTGCCTTAGCTTTCCCCGCGCCAAAAAAAAAAAATCGTTGGGG
GGGGGGGGGCCCCACTAAAACATCCATCCAACCACTTCTGACTTTCCCAA
AGGACCCTTTAACTTTCTCACTTTCCCCCTTCCACCCCTTAACCCCACAC
CTGCCCTTGCTCCCGCCCCGACAAACCCCCTGAAATTCGCCCTCTCACCT
GCCCTGCCCGCCTGTAAATTAACCCTGCACGCCCCACCCCGATTAAACGA
CGCACTTTACGTCTCGCCTCTCCCGACGCGAGCGCCTCTTCCTGCCATCT
ACCTCCCCCCCAACTGCCACAAATCGTCTTCGCACTCGAATCTCTTCGCT
TTTCCTCCCTCCTCGCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_o22.b1 MSMg01no095_o22.b1 CHROMAT_FILE:
MSMg01no095_o22.b1 PHD_FILE: MSMg01no095_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:06 2005
         (316 letters)



>mm_chr16_45922805_45923521
          Length = 717

 Score =  543 bits (281), Expect = e-159
 Identities = 302/309 (97%), Gaps = 1/309 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcttaaat-taccatgaaaaccaatgaagtgaaaataactaaagtttaacaatgca 65
           |||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 207 gaattcttaaacataatatgaaaaccaatgaagtgaaaataactaaagtttaacaatgcg 266

                                                                       
Query: 66  tttctatgggtttgctgaaacatattgcataaataaatagctatcatacttgttatagtc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tttctatgggtttgctgaaacatattgcataaataaatagctatcatacttgttatagtc 326

                                                                       
Query: 126 cacaccgtagggctagtgatcctcatgtgcacatgtgtgcatctgagtgtggaggtatct 185
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 327 cacaccgtagggctagtgatcctcatgtgcacatgtgtgcatctgagcgtggaggtatct 386

                                                                       
Query: 186 gtgtgtgtttcttgagccaggctttctcactggacgtgagctcagtgatttggctggttg 245
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtgtgtttttcttgagccaggctttctcactggacgtgagctcagtgatttggctggttg 446

                                                                       
Query: 246 gctgaccagcaatcctcttgtgagctcctcttatgtctacgtccaaagcattgggatgat 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gctgaccagcaatcctcttgtgagctcctcttatgtctacgtccaaagcattgggatgat 506

                    
Query: 306 tggcatgta 314
           |||||||||
Sbjct: 507 tggcatgta 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 717
Length adjustment: 9
Effective length of query: 307
Effective length of database: 708
Effective search space:   217356
Effective search space used:   217356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)