BAC Information

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BAC

Clone NameMSMg01-096G09
Chromosome16 (Build37)
Map Location 77,594,841 - 77,595,081
singlet/doubletsinglet
Overlap gene2810055G20Rik
Upstream gene1700063K16Rik, LOC665120, Usp25
Downstream geneLOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096G09.T7 (MSMg01no096_g09.b1)MSMg01-096G09.TJ (MSMg01no096_g09.g1)
ACCAG313084AG313085
length726745
length of high quality
(start - end)
241 (79 - 319)290 (70 - 359)
definitionCHROMAT_FILE: MSMg01no096_g09.b1 PHD_FILE: MSMg01no096_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:44 2005CHROMAT_FILE: MSMg01no096_g09.g1 PHD_FILE: MSMg01no096_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAAGTGCGCGGA
ATTCAAGTAGTTTTGCCTACAAATAGATGTATGTATTTGGTTTATAATGA
ACAGGCATTTGAACTGGTCGGACCCGACGACAGAGCAGTGAGCATGAGAT
CATTGCAGCCGAGTAGCAAACTGGCACCCAGCCTTTTCACCCCTTCGGTT
CGGGAGACGAACGTGTGCAGTCCTCGTTTCTCAAGTCAGCCTGGAAGGAT
TCCGGGACTCTCCCACCTTCTACCATTCTGCTGCCAGTCGGTGGCAACGA
TTGGTGCAGATTCTGCGCAGTGTTTTGTGCCTGGAACATGGAGAAGGAAG
AGCATGAAGACAAGCCCTCTGCACCTCCTTCTCTGAGAAATACCGGGAGC
CCAGAAGAAACAGAAAACAACCATCCGAAACAAAAACATTAAACCAAACC
AAACAAAAACCCCTGAGCTTCTCAGTATACGCCTGAGTTGCTGAATATCA
CTGACAACGATGCGGACCGCCTGCGTGTATACATATACAAACTATAAATG
CTAACCGAGACCTATCATATAAAGCAAATTTTGCGTTGTCTACCTCCTGA
CTACTCGGGCCTTCGTTAAGCAGTTTGAACGGCAACACATAATTTATGAA
CCCTTCCTTCTTTTATTTACTTACTGTTGCAATTATTTCTAAAAATTATG
GCCTATAATCAGTACATTGCCCCTGG
TGATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAATCCAAACAGAATTCAGTACTGAAAACAGA
ACTTTCATCTCCATCCCCGACAGAGAAGTTATTTGCAACTGATACCTGCT
CTGAAAGAGAAATCATTTCTCTCCAATAGAGTCACTGGAGTATACCAGTC
AGACTACAAGACAGGTCCCACACAGGAGTGGTTGGCCAACATACAAAAAG
ACACCATGATATTTGTGTGTGCGTGTGTGTGCACATGTGCAAGCACTCAC
AGTTGTTTGTTTATTTTTTTGTTTTATTGGGTTTTGTTTGTTTCTTCTTT
GTTTTTCAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGATTACTCTTTAT
CTGCTTGGTACAAACCCCTCTCCCTTCTTCTATACTTTCCCTATTTTTTT
TTTTTTCCCTCATTTTTTCCCTTCTCCTCTTATTTTCCCCTCTTTATACC
TCCCTCCTTTTTCTTCATTTTTCCCTGTTTTCCCTCTTTTCTCTTTTTCC
TTTTCTCTCCTCCCCTTTTTATCCATCTCTTTTACCTACTTCTTTACCTT
ACCACTTTCTTATTTCTTCATTCTTTCTCTTTATCTTTCCATCACTATTC
TTACTTTCATCCTTTTGTCTCTATCACTCCTCTCTTTCGTCCTTCCTCTT
CCTTTTCACTATTTTTCCCCTCCTTTCCTTTCCTCTTCCCCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_g09.b1 MSMg01no096_g09.b1 CHROMAT_FILE:
MSMg01no096_g09.b1 PHD_FILE: MSMg01no096_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:44 2005
         (241 letters)



>mm_chr16_77594641_77595281
          Length = 641

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtatgtatttggtttataatgaacaggcatttgaactggtcggacccgacgacagagcag 60
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 201 gtatgtatttggtttataatgaacaggcatttgaactggtcggacaggacgacagagcag 260

                                                                       
Query: 61  tgagcatgagatcattgcagccgagtagcaaactggcacccagccttttcaccccttcgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagcatgagatcattgcagccgagtagcaaactggcacccagccttttcaccccttcgg 320

                                                                       
Query: 121 ttcgggagacgaacgtgtgcagtcctcgtttctcaagtcagcctggaaggattccgggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcgggagacgaacgtgtgcagtcctcgtttctcaagtcagcctggaaggattccgggac 380

                                                                       
Query: 181 tctcccaccttctaccattctgctgccagtcggtggcaacgattggtgcagattctgcgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcccaccttctaccattctgctgccagtcggtggcaacgattggtgcagattctgcgc 440

            
Query: 241 a 241
           |
Sbjct: 441 a 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)