Query= MSMg01no096_l06.b1 MSMg01no096_l06.b1 CHROMAT_FILE:
MSMg01no096_l06.b1 PHD_FILE: MSMg01no096_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:09 2005
(580 letters)
>mm_chr16_80478235_80479215
Length = 981
Score = 1093 bits (565), Expect = 0.0
Identities = 577/581 (99%), Gaps = 1/581 (0%)
Strand = Plus / Minus
Query: 1 tcctttatgcttgac-catgtttctccaagaagatatgtgtctgatgagggagtgatctc 59
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tcctttatgcttgactcatgtttctccaagaagatatgtgtctgatgagggagtgatctc 722
Query: 60 tccccgcttaggcacattgaaaagtattcacaagtcttctatgtcccaatttcatactca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tccccgcttaggcacattgaaaagtattcacaagtcttctatgtcccaatttcatactca 662
Query: 120 gatgagaaatcaaaggtttcagcctcatgagcccagccagtgctaaccactgctatgaac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gatgagaaatcaaaggtttcagcctcatgagcccagccagtgctaaccactgctatgaac 602
Query: 180 actttcccttttctttgtcattttatattttgctacatgtgtactgctgttctattttga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 actttcccttttctttgtcattttatattttgctacatgtgtactgctgttctattttga 542
Query: 240 tcaataacactttccaaagagattattttctataatccctctttcagaatcctgtaagtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 541 tcaataacactttccaaagagattattttctataatccctctttcagaatcctataagtt 482
Query: 300 ttatctatactctatttcaattaaagttctatacctgggattttttttaaaaaatgttta 359
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 481 ttatctatactctatttcaattaaagttctatatctgggattttttttaaaaaatgttta 422
Query: 360 tttcaacggcataatattttcttattttcagggacctgacatacttcacaaagtatgttg 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tttcaacggtataatattttcttattttcagggacctgacatacttcacaaagtatgttg 362
Query: 420 ttattttattatcatgagttcagattatttcttggtgagaataattgaattgatctgtct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttattttattatcatgagttcagattatttcttggtgagaataattgaattgatctgtct 302
Query: 480 aaaatcttaactatgtgaatgattttatcatatttttgtagaatttcaatatagacaatt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaatcttaactatgtgaatgattttatcatatttttgtagaatttcaatatagacaatt 242
Query: 540 gactccaatgattgcttttaagagcaagtgattataaatca 580
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gactccaatgattgcttttaagagcaagtgattataaatca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 981
Length adjustment: 10
Effective length of query: 570
Effective length of database: 971
Effective search space: 553470
Effective search space used: 553470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no096_l06.g1 MSMg01no096_l06.g1 CHROMAT_FILE:
MSMg01no096_l06.g1 PHD_FILE: MSMg01no096_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:09 2005
(475 letters)
>mm_chr16_80408843_80409717
Length = 875
Score = 857 bits (443), Expect = 0.0
Identities = 464/471 (98%)
Strand = Plus / Plus
Query: 5 aattccttcttgcatcatgggatcattattctgtttctgtgatgttggcagagacacaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aattccttcttgcatcatgggatcattattctgtttctgtgatgttggcagagacacaca 264
Query: 65 caatgccattgtatttgagaaattggtaaaatatgaaaaccttcaaaagaagaacaaaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caatgccattgtatttgagaaattggtaaaatatgaaaaccttcaaaagaagaacaaaga 324
Query: 125 gatgatgaatcctgactatgacttcctttctaggtgttttgaaaagaattatgtgaattt 184
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 gatgatgaatcctgactatgacttcctttctaggtgttttgaaaagaatcatgtgaattt 384
Query: 185 tatgattctttataaactatgattcatagtttactaaatttaattttattagctatccaa 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 tatgattctttataaactatgattcatagtttactaaatttaattttattagctattcaa 444
Query: 245 acatggttttataaatatgctatacaaaagcatatatgaacaatatgttattagtaagtt 304
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agatggttttataaatatgctatacaaaagcatatatgaacaatatgttattagtaagtt 504
Query: 305 caatttggcagaaaaatatataatccactttgtagacgaaataatacatatctccattca 364
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caatttgacagaacaatatataatccactttgtagacgaaataatacatatctccattca 564
Query: 365 catagtttaaaaaccagaagttattgtgaaattgggtttaggagtgctttctgatgttac 424
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 565 catagtttaaaaaccagaagttattgtgaaaatgggtttaggaatgctttctgatgttac 624
Query: 425 ccttatccctacttgccagttgcccacttacttgatcagtcataccatcaa 475
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccttatccctacttgccagttgcccacttacttgatcagtcataccatcaa 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
