BAC Information

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BAC

Clone NameMSMg01-097O13
Chromosome16 (Build37)
Map Location 34,271,147 - 34,271,614
singlet/doubletsinglet
Overlap geneKalrn
Upstream geneSnx4, Zfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, LOC100043670
Downstream geneRopn1, Ccdc14, Mylk, Ptplb, Adcy5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097O13.T7 (MSMg01no097_o13.b1)MSMg01-097O13.TJ (MSMg01no097_o13.g1)
ACCAG314222AG314223
length766647
length of high quality
(start - end)
192 (182 - 373)466 (30 - 495)
definitionCHROMAT_FILE: MSMg01no097_o13.b1 PHD_FILE: MSMg01no097_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:49 2005CHROMAT_FILE: MSMg01no097_o13.g1 PHD_FILE: MSMg01no097_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAACCCANNANNNNNNNNAAANAAANNNNACATCCANAANAATAACCT
ACCNNNCACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCTGACCG
TCCGNGGAANTNNTCATTTTGCTATAACCCCCAGAGANNAGAGNAAGTTG
TGGGGTCTGATTGTAANCTTAGCAAGTCCGATCCAGGATTCCTGGTTCTT
GCCTGTATGCCCGTCCAGTACACTGTGCACCAAGGTGGTGGTTGCTGTTG
TTGCTGCTGCTGCTTTTGTTCCTCTTCCTTCCCCCCCCTCCTCCCCCTCC
TCCTCCTCTTCTTCTCCTCCTTTTTCTCCTATTCCTTCTCCCCCTTTCCT
CTTCCTCTTCTTCCTTCTCTTCCTTTTTTTTTTCTTCATCCTTCTCCCTG
CATGTCCCCTTATGATTTATTTTGCCCCCCCCCCCCGCCCATTTAGATCT
CAGAATACATTTGGACAATTTACCTGAGATAATTAAAACCCATTCCGGCA
CCGTTGTAAACCACTAAAACTCTTTTCCTTCCGTCTGTTGGTCCTATCCC
ATGTTAACCCCTAAACCTCATTGTTAACCCACACATTTCTGCAGGCTTTC
CTTTCAGGGCTAATGGGTCTATTTGTCTCACACTTTCTTCCCTCCGCTAC
TTGCCTCCCCCCAGCCCCGTAATTTCGAATCTCTTCTTAACATCCTATTT
GTTTTGCCCTTCGCTTTCTTTTATTCACCCCCCCCCCCTTTAAATTTTTG
CAATTACCCTTGGCCC
GACCTATAGAATGTTCCGCGAAATTCCACAGGAGAATGAATTTCCACAGG
TCCGGAAACACTGGCGCTCTGTATCTACATCTGGGTTCTTAAATCTACCT
TCCTCAACTTTCTACTATTTTTGTTCATATTCTCATGAAGAGGCTGCATA
CTCCCACTCGTTATATTTTGCTGATTTGAGTAGAATCAAGGTGTGGCAGG
GTGGGGCTGATCAGAGGAGCAGAGACTGTGTTGTCCAGTTGCAGGATGGT
GAGATGTTTCTTTTGTGATCTCTATAGCTTTTTGTCTTTATGTCGTGACA
ATACTCCTGCATTCTGAGCCCTGCTGTTCCCTTCTGTTTGTTTCATTGCA
GCACCTCTGGGTCAGCTTCTGGCTCCTAGTCCTTCCATATTCTATACTAT
ATTTCTTATTTTTCAGATCTCAATACTAGCCTGGGCTCTCCCAGCCTTGT
CTTCCAGCACTGTATCTGTCCTCCATTGGTCTTCTCTGTCCCTTTACAGA
GAAATGGGCAAAAGTCTTTGTTTTGTCCTATGGCAGTTCCATGAGGGCTG
CCATGTTCTCTGGAATCTTAACTGGACTTCCCCAAGGGGCTGACCCTGGT
ACTTCCTGTCTACTCGTACCTTGTGACTCCTCGACCCAGCCTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_o13.g1 MSMg01no097_o13.g1 CHROMAT_FILE:
MSMg01no097_o13.g1 PHD_FILE: MSMg01no097_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:49 2005
         (466 letters)



>mm_chr16_34270947_34271814
          Length = 868

 Score =  791 bits (409), Expect = 0.0
 Identities = 453/469 (96%), Gaps = 4/469 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggagaatgaatttccacaggtccggaaacactggcgctctgtatctacatctgggttct 60
           |||||||||||||| |||||| |||||| ||||||||||||||||||||||||||| |||
Sbjct: 668 aggagaatgaatttgcacaggaccggaaccactggcgctctgtatctacatctgggctct 609

                                                                       
Query: 61  taaatctaccttcctcaactttctactatttttgttcatattctcatgaagaggctgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 taaatctaccttcctcaactttctactatttttgttcatattctcatgaagaggctgcat 549

                                                                       
Query: 121 actcccactcgttatattttgctgatttgagtagaatcaaggtgtggcagggtggggctg 180
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 548 actcccactcgttatattttgctgatttgagtagaatcaaggtgtggtggggtggggctg 489

                                                                       
Query: 181 atcagaggagcagagactgtgttgtccagttgcaggatggtgagatgtttcttt---tgt 237
           ||| |||||||||||||||||||||||||||||||||||||||||| ||| |||   |||
Sbjct: 488 atcggaggagcagagactgtgttgtccagttgcaggatggtgagatttttttttgtgtgt 429

                                                                       
Query: 238 gatctctatagctttttgtctttatgtcgtgacaatactcctgcattctgagccctgctg 297
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gatctctagagctttttgtctttatgtcgtgacaatactcctgcattctgagccctgctg 369

                                                                       
Query: 298 ttcccttctgtttgtttcattgcagcacctctgggtcagcttctggctcctagtccttcc 357
           |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttcccttctgtttgttccat-gcagcacctctgggtcagcttctggctcctagtccttcc 310

                                                                       
Query: 358 atattctatactatatttcttatttttcagatctcaatactagcctgggctctcccagcc 417
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 309 atattctatactatatttcttatttttcagatctcaatactaacctgggctctcccagcc 250

                                                            
Query: 418 ttgtcttccagcactgtatctgtcctccattggtcttctctgtcccttt 466
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttgtcttccagcactgtatctgtcctccattggtcttctctgtcccttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 868
Length adjustment: 10
Effective length of query: 456
Effective length of database: 858
Effective search space:   391248
Effective search space used:   391248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)