BAC Information

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BAC

Clone NameMSMg01-098D02
Chromosome16 (Build37)
Map Location 82,841,720 - 82,842,340
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435484, Pgk1-ps1, EG665260
Downstream geneEG545172, LOC100039572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098D02.T7 (MSMg01no098_d02.b1)MSMg01-098D02.TJ (MSMg01no098_d02.g1)
ACCAG314436AG314437
length668693
length of high quality
(start - end)
652 (17 - 668)619 (73 - 691)
definitionCHROMAT_FILE: MSMg01no098_d02.b1 PHD_FILE: MSMg01no098_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:13 2005CHROMAT_FILE: MSMg01no098_d02.g1 PHD_FILE: MSMg01no098_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATCGAGAGAGGATCCGCGGAATTCTTTGTTTCCCTCTGAGCCCCA
TTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACTCAACTATCAAAAA
GAATGAATTTATGAGATTCCTAGGCAAATGGATGGACCTGGAGGTTATCA
TCCTGAATGAGGTAACCCAATCACAAAACAACTCTCCTGATATGGTGATA
TGTACTCACTGATAAGTGGATATTAGCCCAGAACCTTAGAATACCCAAGA
TACAAGATACAATTTGCAAAACACATGAAACTCAAGAAGAATGAAGACCA
AAGTGTGGGTACTTTGCCCCTTCTTAGAATTGAGAACAAACATTCATGGA
AGGAGTTACAGATACAAAATGTGGAACTGAGACAAAAGGATGGACCATCT
AGAGACTGCCACACCTGGGGATCCATTCCATAATCAGCCTCCAAACACTG
ACAACAATGCACACACTAGCAAGATTTTGCTGAAAGGACCCTGATATAGC
TGTCTCTTGTGAGGCTATGCTAGTGCCTGGCAAACACAGAAGTGTATGCT
CTCACAGTCAGCTATTGGATGGAACACAGGGACCCCAATTAAGGACCTAG
AGAAAGTACCCAAGGAGCTAAAGGGATTTGCAACCCTATAGGTGGAACAA
CAATATGAACTAACCAAT
GATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTCAGGAATTAGAAAATTGCTTCATCT
TTAAATGTTTTTATTTTCCTCTGAAAATGCTGAGATTTATATTCCTGAAA
TTAAAAACTTTCTTTTATACCAGTAAGAAAGGGGGAAAAGAAATTTGTCA
TACAAAAATATTGAAAAGATACTTGAAGTTTTTACATGAATAGTTACACT
AATTGCTGAGGCCATTCCATGCTCACATAGCCATTAATCAAAGACAGAAT
GATAAATATACGCTGTAGTTTATAAACTCCTTTGGAAACTATTAAAATAA
ATTATTCACGTGCTGTAGAGTTGACTAAATGTGAATCTATTGTGCTATGT
ATTCAGAGATCTAATTCTTTTTAAATGGGATATTATTTCAGGGATGCAGA
TATGCACAATATCTTTAAATGAATTGTTGGGATAATTAAACTCAGGGATA
TTTAAAATGTAAAAAAAACTCAGAAATTATAAAAAAACTTTCATGAATTA
TCACAATAGTTTAAATGCATAATTCAATAAATTGAACTTTTTTTAAATCA
TGTTTTAATTACGAGACAAGAAATGGTAAATGCTGATATTTTGAGACCAG
ATCATTCTTATTGCTGTTGATATTCTTTATATTAAGTGGGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_d02.g1 MSMg01no098_d02.g1 CHROMAT_FILE:
MSMg01no098_d02.g1 PHD_FILE: MSMg01no098_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:13 2005
         (619 letters)



>mm_chr16_82841520_82842540
          Length = 1021

 Score = 1145 bits (592), Expect = 0.0
 Identities = 614/622 (98%), Gaps = 4/622 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcaggaattagaaaattgcttcatctttaaatgtttttattttcctctgaaaatgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcaggaattagaaaattgcttcatctttaaatgtttttattttcctctgaaaatgctg 260

                                                                       
Query: 61  agatttatattcctgaaattaaaaactttcttttataccagtaagaaagggggaaaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatttatattcctgaaattaaaaactttcttttataccagtaagaaagggggaaaagaa 320

                                                                       
Query: 121 atttgtcatacaaaaatattgaaaagatacttgaagtttttacatgaatagttacactaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgtcatacaaaaatattgaaaagatacttgaagtttttacatgaatagttacactaa 380

                                                                       
Query: 181 ttgctgaggccattccatgctcacatagccattaatcaaagacagaatgataaatatacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgctgaggccattccatgctcacatagccattaatcaaagacagaatgataaatatacg 440

                                                                       
Query: 241 ctgtagtttataaactcctttggaaactattaaaataaattattcacgtgctgtagagtt 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtggtttataaactcctttggaaactattaaaataaattattcacgtgctgtagagtt 500

                                                                       
Query: 301 gactaaatgtgaatctattgtgctatgtattcagagatctaattctttttaaatgggata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gactaaatgtgaatctattgtgctatgtattcagagatctaattctttttaaatgggata 560

                                                                       
Query: 361 ttatttcagggatgcagatatgcacaatatctttaaatgaattgttgggataattaaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 ttatttcagggatgcagatatgcacaatatctttaaatgaattgttgggataattaagct 620

                                                                       
Query: 421 cagggatatttaaaatgtaaaaaaaa--ctcagaaattataaaaaaa-ctttcatgaatt 477
           ||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||
Sbjct: 621 cagggatatttaaaatgtaaaaaaaaaactcagaaattataaaaaaaactttcatgaatt 680

                                                                       
Query: 478 atcacaatagtttaaatgcataattcaataaattgaactttttttaaatcatgttttaat 537
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 681 atcacaatagtttaaatgcataattcaataaattgaactttttttta-tcatgttttaat 739

                                                                       
Query: 538 tacgagacaagaaatggtaaatgctgatattttgagaccagatcattcttattgctgttg 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tacgagacaagaaatggtaaatgctgatattttgagaccagatcattcttattgctgttg 799

                                 
Query: 598 atattctttatattaagtgggg 619
           |||||||||| |||||||||||
Sbjct: 800 atattctttacattaagtgggg 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1021
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1011
Effective search space:   615699
Effective search space used:   615699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)