BAC Information

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BAC

Clone NameMSMg01-098D22
Chromosome16 (Build37)
Map Location 25,955,249 - 26,104,413
singlet/doubletdoublet
Overlap geneLOC100043571, Leprel1
Upstream geneLpp, 5430420C16Rik, Trp63
Downstream geneCldn1, Cldn16, LOC100043057, Il1rap, Gm606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098D22.T7 (MSMg01no098_d22.b1)MSMg01-098D22.TJ (MSMg01no098_d22.g1)
ACCAG314476AG314477
length678755
length of high quality
(start - end)
549 (19 - 567)288 (120 - 407)
definitionCHROMAT_FILE: MSMg01no098_d22.b1 PHD_FILE: MSMg01no098_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:17 2005CHROMAT_FILE: MSMg01no098_d22.g1 PHD_FILE: MSMg01no098_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,955,249 - 25,955,790)(26,104,131 - 26,104,413)
sequence
ACTACCTTCCAGAAGAGGATCCGCGGAATTCATCTGCCCATTCCTTCCTA
TATCTGGCATAACTCATGCATTACACTATTTATTTTATGTTGCCAATTCA
TTGACCTCGGTTTTCTTTCACTTTATTCTGAGTCCCTCCATTCATTCTCA
GTATACTCATGGTCTTTATGTAGCCACTCAAGACTATCTGAGAAACAAAC
TCAGTAATGATCAAAAGCTTTGTTCAATCTTCTTCCCCCGAGACTGCCTC
TTTCCCCCTATCTACAAAATAAAGATCGTATTAAACGTCTCTCATAATTA
TGTACTTATATATGAATGCCAAGTGCTTCAAGACCATAAAATGAGTTATA
AATGCCAACTGTGATTATAAGTCTTTGAAACAATGGGATATATGGTTAGT
GAGTGGAAAAAGATGAGACACGGCCAGTAATTCTTGCCCGGTCCCTGCTT
CTACCCCACCCACCACCAGATGTAACTCAAGGGTGAAAACATGAATCTGG
AAAGGAGAAGGCTTTAACTAAGGTCTAAAGGACTCCTGAGACTTATGTCA
GGGACCTACCTTCATGTGGGAAGGCATTCAAGTCAGAGAAGAAGAGCCTA
AGGAAGGGTTTCCATTATATAAATAAGACTAATATCCAGTTTGAGGTTGA
AGTGGAGACCCTGATGGAAAAGACTCGT
NNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCNNNNNCTTATTTTNNN
NNTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCCCCCGCGGAATTCTCTCCAGGACATGTGTGTTGTCTGT
TCTCTTGTGCTTTCCAATGCATTTGCTGAAGACATGTATCATGCATAAAT
CTGCCTTTTAGAAAGAAAAGGGCACAGTTTTTCCTGTTCTTCCAGAAATT
AGTCAGTTCTGGGAGAGGGACTAAGCTGGTTCCCAGAGCAGAATGTGAGT
GATCCTGTCGTATGGTCCTTTTGAGAGTCTGGGCTGCAAGGGGGAGATGT
GGCCATTTTGCTGATGAGTCTGTAGCTCGTGGCAAATAGATTTTCTCTTC
TCAGGATGATCAGGACAAGAGAGGGATGCATACTCACCCTGTGAAAATAA
ACAGCCATGCAGCCAGCATGTGAATTTCTGTGATTCTGTAGGCATATACT
TTTATGTAATATTAACATTTATTTCTCATCCCCTTGCCCCTGGTCCCCAA
TGAGAGGTCAAAGAAGATGATACCATAAGCCTAAGAGGCCTTTTCTAATG
ACTTTGATTCACATAACTGACAAATTCTGATGAAGGAAAGGTTTTTTACC
CCTATAGGAATTTGCTCATTACCACCTACAGGCTGCATTAAAACTCTTTT
CCTCTCTGTGCTTCTTGGAAACTCTAAAGGTAAACTTGCCTCCCTTCTCT
AGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_d22.b1 MSMg01no098_d22.b1 CHROMAT_FILE:
MSMg01no098_d22.b1 PHD_FILE: MSMg01no098_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:17 2005
         (549 letters)



>mm_chr16_25955042_25955990
          Length = 949

 Score = 1002 bits (518), Expect = 0.0
 Identities = 536/542 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcatctgcccattccttcctatatctggcataactcatgcattacactatttattt 67
           ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcatctggccattccttcctacatctggcataactcatgcattacactatttattt 267

                                                                       
Query: 68  tatgttgccaattcattgacctcggttttctttcactttattctgagtccctccattcat 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tatgttgccaattcattgacctcggttttctttcactttattctgagtccctccattcat 327

                                                                       
Query: 128 tctcagtatactcatggtctttatgtagccactcaagactatctgagaaacaaactcagt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tctcagtatactcatggtctttatgtagccactcaagactatctgagaaacaaactcagt 387

                                                                       
Query: 188 aatgatcaaaagctttgttcaatcttcttcccccgagactgcctctttccccctatctac 247
           |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 388 aatgatcaaaagctttgttcaatcttcttcccccaagactgcctctttcaccctatctac 447

                                                                       
Query: 248 aaaataaagatcgtattaaacgtctctcataattatgtacttatatatgaatgccaagtg 307
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aaaataaagatcgtattaaacatctctcataattatgtacttatatatgaatgccaagtg 507

                                                                       
Query: 308 cttcaagaccataaaatgagttataaatgccaactgtgattataagtctttgaaacaatg 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cttcaagaccataaaatgagttataaatgccaactgtgattataagtctttgaaacaatg 567

                                                                       
Query: 368 ggatatatggttagtgagtggaaaaagatgagacacggccagtaattcttgcccggtccc 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggatatatggttagtgagtggaaaaagatgagacacggccagtaattcttgcccggtccc 627

                                                                       
Query: 428 tgcttctaccccacccaccaccagatgtaactcaagggtgaaaacatgaatctggaaagg 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tgcttctaccccacccaccaccagatgtaactcaagggtgaaaacatgaatctggaaagg 687

                                                                       
Query: 488 agaaggctttaactaaggtctaaaggactcctgagacttatgtcagggacctaccttcat 547
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 688 agaaggctttaactaaggtctaaaggactcctgagacttatgtcagggacctgccttcat 747

             
Query: 548 gt 549
           ||
Sbjct: 748 gt 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no098_d22.g1 MSMg01no098_d22.g1 CHROMAT_FILE:
MSMg01no098_d22.g1 PHD_FILE: MSMg01no098_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:17 2005
         (288 letters)



>mm_chr16_26103931_26104618
          Length = 688

 Score =  509 bits (263), Expect = e-148
 Identities = 278/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattctctccaggacatgtgtgttgtctgttctcttgtgctttccaatgcatttgctga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 483 gaattctctccaggacatgtgtgttgtctgttctcttgtgctttccaatggatttgctga 424

                                                                       
Query: 61  agacatgtatcatgcataaatctgccttttagaaagaaaagggcacagtttttcctgttc 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 agacatgtatcacgcataaatctgccttttagaaagaaaagggcacagtttttcctgttc 364

                                                                       
Query: 121 ttccagaaattagtcagttctgggagagggactaagctggttcccagagcagaatgtgag 180
           || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 363 tttcagaaattagtcagttctgggggagggactaagctggttcccagagcagaatgtgag 304

                                                                       
Query: 181 tgatcctgtcgtatggtccttttgagagtctgggctgcaagggggagatgtggccatttt 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgatcctgtcgtgtggtccttttgagagtctgggctgcaagggggagatgtggccatttt 244

                                                      
Query: 241 gctgatgagtctgtagctcgtggcaaatagattttctcttctc 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gctgatgagtctgtagctcgtggcaaatagattttctcttctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)