Query= MSMg01no098_h23.b1 MSMg01no098_h23.b1 CHROMAT_FILE:
MSMg01no098_h23.b1 PHD_FILE: MSMg01no098_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:38 2005
(590 letters)
>mm_chr16_43173142_43174131
Length = 990
Score = 1089 bits (563), Expect = 0.0
Identities = 581/589 (98%), Gaps = 6/589 (1%)
Strand = Plus / Plus
Query: 5 gaattcccatataccaagaa---atagaagcatatttcaggaaaactctaagagattagc 61
||||||||||| | || || |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccataga--aa-aagggatagaagcatatttcaggaaaactctaagagattagc 261
Query: 62 cagatgattaggccaggacattttaagttcagattttatgtagaatttctatggcattat 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cagatgattaggccaggacattttaagttcagattttatgtagaatttctatggcattat 321
Query: 122 tttagttgactgaagaatgctagaaaatctaaagatatttcaaattaaaaatatcttttt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tttagttgactgaagaatgctagaaaatctaaagatatttcaaattaaaaatatcttttt 381
Query: 182 attaccctatgatttctctaaattgttttcttaagatgtagtcagaactcatattgattt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 attaccctatgatttctctaaattgttttcttaagatgtagtcagaactcatattgattt 441
Query: 242 gtaaactcaaaggcaactgataaaccaattaaattaatctaatggaaccattctcccata 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gtaaactcaaaggcaactgataaaccaattaaattaatctaatggaaccattctcccata 501
Query: 302 attttgaaagaatccgatttatatctagtgaactctcatggtaacaatcttttcattcgg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 attttgaaagaatccgatttatatctagtgaactctcatggtaacaatcttttcattcgg 561
Query: 362 attttgttcagttccatggacattaagtaaatgtatagtatgtgtaaagtactatagtag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 attttgttcagttccatggacattaagtaaatgtatagtatgtgtaaagtactatagtag 621
Query: 422 atacttttggtagttctgcatattgccttatagtattgaatatattgtcatatatatttt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atacttttggtagttctgcatattgccttatagtattgaatatattgtcatatatatttt 681
Query: 482 cttgtttatggtaagtttttaccttttaattatttgttacataaattgtgtaaagtttca 541
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 682 cttgtttatggtaagtttttaccttttaattatttcttacataaattgtgtaaagtttca 741
Query: 542 gatgttatagtttatttgttctgtgtttgtttggggtgagcctgaagac 590
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gatgttatagtttatttgttctgtgtttgtttggggtgagcctgaagac 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_h23.g1 MSMg01no098_h23.g1 CHROMAT_FILE:
MSMg01no098_h23.g1 PHD_FILE: MSMg01no098_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:38 2005
(627 letters)
>mm_chr16_43249821_43250847
Length = 1027
Score = 1205 bits (623), Expect = 0.0
Identities = 626/627 (99%)
Strand = Plus / Minus
Query: 1 aatctgagtttttcacacagcaatccagacatgatttgaaactctcccagatctctttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aatctgagtttttcacacagcaatccagacatgatttgaaactctcccagatctctttat 609
Query: 61 cactccgacatgttagagaagcaaggcggtatgcagtcccagcgcagcaggtgtttcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cactccgacatgttagagaagcaaggcggtatgcagtcccagcgcagcaggtgtttcctg 549
Query: 121 aggaggggacagtactaggacagggctgtcctcagcttctttgcagtagctgtcctgcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aggaggggacagtactaggacagggctgtcctcagcttctttgcagtagctgtcctgcct 489
Query: 181 ttggctgtccaccgtgctgcactttgttgtcatgtgtttgcagaggagcaaatgtgtttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttggctgtccaccgtgctgcactttgttgtcatgtgtttgcagaggagcaaatgtgtttg 429
Query: 241 cattggaactctttaatgaaatattgtcacagtggaatttggctatagttcataaactgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cattggaactctttaatgaaatattgtcacagtggaatttggctatagttcataaactgg 369
Query: 301 ttcatatctatatattgaccataaagagtgaaaacaaggatgatttatttctttactgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttcatatctatatattgaccataaagagtgaaaacaaggatgatttatttctttactgct 309
Query: 361 ctcattaacccaaaaggctgtacaagactggttttaaaataatctttggccaaaactcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ctcattaacccaaaaggctgtacaagactggttttaaaataatctttggccaaaactcat 249
Query: 421 cactaaaatgggctcttccacaagtttaagaagataaactactagatctgtgtgtgcgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cactaaaatgggctcttccacaagtttaagaagataaactactagatctgtgtgtgcgtg 189
Query: 481 tgtgttcgcgtgtgtgcatgtgcgtgtgtccaattactgttctttacagggctatattac 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 188 tgtgttcgcgtgtgtgcatgtgcgtgtgtccaattgctgttctttacagggctatattac 129
Query: 541 actgtaggattccaaggcagctgagagtcactgaaaacacaaaataaagtgaaggaaaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 actgtaggattccaaggcagctgagagtcactgaaaacacaaaataaagtgaaggaaaat 69
Query: 601 acactgtcttgggaagacaataggatt 627
|||||||||||||||||||||||||||
Sbjct: 68 acactgtcttgggaagacaataggatt 42
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
