BAC Information

Click to search

BAC

Clone NameMSMg01-099C08
Chromosome16 (Build37)
Map Location 37,607,045 - 37,607,389
singlet/doubletsinglet
Overlap geneHgd
Upstream geneCd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l, Gtf2e1, Rabl3
Downstream geneNdufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099C08.T7 (MSMg01no099_c08.b1)MSMg01-099C08.TJ (MSMg01no099_c08.g1)
ACCAG315150AG315151
length701709
length of high quality
(start - end)
443 (51 - 493)344 (76 - 419)
definitionCHROMAT_FILE: MSMg01no099_c08.b1 PHD_FILE: MSMg01no099_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:29 2005CHROMAT_FILE: MSMg01no099_c08.g1 PHD_FILE: MSMg01no099_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAAAAGAAACCTAACCAATGGCTGAGAGACACATAAAGA
AAATTATTAATATCCACAGTCATCAGGGAAATGCAATTCAAAAGTACTTT
GAGGTATCATCTTATGCCAATCAGAGTATTCAAGAACAATAAAACAAATA
TCAGCTCATGCTATTGAGGATATAAGGGGAACAGTTATGCATTCTTGGTT
AGAGTGCAAAATTGTACAGCTATTATTGAAAACAGTGTGACAGTTCCTCA
CAAAGCTGAGAACGTATCTACCTCAAGATCCATCTATACCACTGTTGAAC
ATATATCCAAAGGACATTTCAAAATTCTCCTATAGAGACACTTGCATAAT
CATGTCCACTGCTGCTCAATTCATAATACACCAAAACTGGGAACAACCTA
TATATCTCTATCAGCATCAGCCGGTAGATTTAACAAAATGTGATATAGTT
ACTCAATGGAATATTACACAGTCATTAAAAATATGAAATCATGGGTTGGA
GAGATGGCTCAGCAGTTAAGAGCACTAACTGTTCTTCCAGAGGTTCCGAG
TTCAATTCCCAGCAACCACAGGTTGGCTCACAACCATCTGTAACGTTATC
CGATGTCCTCTTCTGGTGCGTTTGAAGACAGCTCCCGTGTACTCTGTCTA
T
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGCACTTGGGAGACTGAGGCAGGA
GGGTTGAAGGTTTTACATCCCTGGGATATAGACAAAGGTCTTTTGAAAGA
AAAAAGAATTGAAACCAGAGTACCAAGACAACAAATCAAACAATTACCTC
ATTTCCAACAAATAGTCAGAGGAAAGGTTGTGTGAGGACAAGAGGGAAGA
TGACCCAGATATAGATCCAAGAGAAAGCCATTATCAGACATCTCCCTTTT
CACCCCTTAATCCTGGACTCTCAGTCTCCTAGCTTTGAAGGTACTGATCC
TGTTATTTAGGTGGCTCAGCAATGGCGTAACATAGTGTTATAATTTCATA
ACCATTTATTTTATTCACACTGCATACAATCACTGAATAGCTCCTCCCAT
CTGGAATTTAATTAAGACTTTGAGACCCGATGACAGAGATTGCAGCGTCC
AATGCAACATCCAGACTATATTATGCATCAGTGCATATCCACTGAATGGT
TGAACAGACGAACAACTGTCACTCCGCAGAATATTGCTTATACACGCCCA
AATGTTTTTTTCTATGTGTACACCCAATTGCTTTTCCATTCTCCTGCTCT
CTCTAATTGAACGAATTACCTCTTACTTCCCCAAATAGTGACGGTGGCAA
TCCCAGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_c08.g1 MSMg01no099_c08.g1 CHROMAT_FILE:
MSMg01no099_c08.g1 PHD_FILE: MSMg01no099_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:29 2005
         (344 letters)



>mm_chr16_37606845_37607589
          Length = 745

 Score =  652 bits (337), Expect = 0.0
 Identities = 343/345 (99%), Gaps = 1/345 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcacttgggagactgaggcaggagggttgaaggttttacatccctgggatatagacaa 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 545 aggcacttgggagactgaggcaggagggttgaaggttttacagccctgggatatagacaa 486

                                                                       
Query: 61  aggtcttttgaaagaaaaaagaattgaaaccagagtaccaagacaacaaatcaaac-aat 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 485 aggtcttttgaaagaaaaaagaattgaaaccagagtaccaagacaacaaatcaaacaaat 426

                                                                       
Query: 120 tacctcatttccaacaaatagtcagaggaaaggttgtgtgaggacaagagggaagatgac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacctcatttccaacaaatagtcagaggaaaggttgtgtgaggacaagagggaagatgac 366

                                                                       
Query: 180 ccagatatagatccaagagaaagccattatcagacatctcccttttcaccccttaatcct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ccagatatagatccaagagaaagccattatcagacatctcccttttcaccccttaatcct 306

                                                                       
Query: 240 ggactctcagtctcctagctttgaaggtactgatcctgttatttaggtggctcagcaatg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ggactctcagtctcctagctttgaaggtactgatcctgttatttaggtggctcagcaatg 246

                                                        
Query: 300 gcgtaacatagtgttataatttcataaccatttattttattcaca 344
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gcgtaacatagtgttataatttcataaccatttattttattcaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 745
Length adjustment: 9
Effective length of query: 335
Effective length of database: 736
Effective search space:   246560
Effective search space used:   246560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)