BAC Information

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BAC

Clone NameMSMg01-099D20
Chromosome16 (Build37)
Map Location 51,044,660 - 51,044,792
singlet/doubletsinglet
Overlap genenone
Upstream geneEG224180, EG667802, LOC100043404, Bbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik, EG639820
Downstream geneLOC627543, Cblb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099D20.T7 (MSMg01no099_d20.b1)MSMg01-099D20.TJ (MSMg01no099_d20.g1)
ACCAG315222AG315223
length700716
length of high quality
(start - end)
137 (46 - 182)156 (76 - 231)
definitionCHROMAT_FILE: MSMg01no099_d20.b1 PHD_FILE: MSMg01no099_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:37 2005CHROMAT_FILE: MSMg01no099_d20.g1 PHD_FILE: MSMg01no099_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCG
GAATTCACTGAATATTCTAATAAAAAAAGCTACTGTTCTATACAATGTAG
GGAAATTCAGTGGGTACAGTGTCGGATCAGCATACCAAAGAACCCTGTTG
GTTTCTCTGTACCACCCAAACCAGGGAAGTGGCGCAGGCGTCTGTTATCC
CTGCACAAAGATCAGGAGTTTGATGCTATAGATCAGTGGGTAGACAATCT
GACTAAAACACCAGGGGACCTGGGTTCTTGTATGGCTTGATCACCACCGT
TTTCATTGTTCAGTCATGTAATCCATATTTCCCTCCAGTCTTGCTCAGAT
ATTTGGCGTATCTTAAAATCCCTTTCTAGCGTAATCCCAGCATCCAATTC
AGCATGGCTACTACTTCTCCCCCCTAATTTTCTTCTTCAAATATTGACAT
TTCAATATTTCCTTTATTCTTCCTCCTGTATCTGCATTTTATATGGAGTT
TGCTTTTCCTATGAGCATGATAACAATATTACTGAAACTTGTATATATGT
TTGGTCGCTTCCCTTTCTGTTTCTGAAGACTTATGTCTTATTTCCCCTGG
ATCTTAGTTGATCTACCCTCTCTCTTTTGTTGTCCCGCTTGTCCTCCGCC
CATTCCCCCCCTTGCTCGCCCCGTTTTCGCCATGTGGTCGTTTTTCGTTT

CAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGCATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAATCACTCTGGAGA
TCAGTCTGGCGGTTCCTCAGAAAATTGTATATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCACATACTCCAGAAGATGCCCCAACTGGTAAG
AATGACACATGCTCTACTATGTTCATAGCAGCCTTATTCATAATAGCCAG
ATGCTGGAAGGAATCCATATGTCCCCCCCCATAGGACTGGACACCGAAGA
TGCGCCACATCCCACTCCCTGTACCACTTACTCACCTATTATTATGAATG
ATTTTATGAAATTCCTGGCCTAACGGATGGACCCTGTAGTGTCACCCCCC
TGCAGTGAGGTAACTCACTCATTCCGGAAATTCTCCCTTTTTTTTTTTCC
CCTGATTATCTCGGTACCCCTATTCCCTATCCCCCCCTCACCCTCTTTTC
CACCCCACCCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_d20.b1 MSMg01no099_d20.b1 CHROMAT_FILE:
MSMg01no099_d20.b1 PHD_FILE: MSMg01no099_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:37 2005
         (137 letters)



>mm_chr16_51044456_51044992
          Length = 537

 Score =  221 bits (114), Expect = 2e-62
 Identities = 129/136 (94%), Gaps = 6/136 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcactgaat---attctaataaaaaaagctactgttctatacaatgtagggaaat 61
           ||||||||||||||   |  | ||||| ||||||||||||||||||||||||||||||||
Sbjct: 337 ggaattcactgaatagca--c-aataagaaaagctactgttctatacaatgtagggaaat 281

                                                                       
Query: 62  tcagtgggtacagtgtcggatcagcataccaaagaaccctgttggtttctctgtaccacc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tcagtgggtacagtgtcggatcagcataccaaagaaccctgttggtttctctgtaccacc 221

                           
Query: 122 caaaccagggaagtgg 137
           ||||||||||||||||
Sbjct: 220 caaaccagggaagtgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 537
Length adjustment: 8
Effective length of query: 129
Effective length of database: 529
Effective search space:    68241
Effective search space used:    68241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)