Query= MSMg01no100_e04.b1 MSMg01no100_e04.b1 CHROMAT_FILE:
MSMg01no100_e04.b1 PHD_FILE: MSMg01no100_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:04 2005
(410 letters)
>mm_chr16_45803541_45804350
Length = 810
Score = 658 bits (340), Expect = 0.0
Identities = 390/408 (95%), Gaps = 8/408 (1%)
Strand = Plus / Plus
Query: 7 gaattcactctttatcacaccttgtcttatagcccttcttcatatatggcaaatacatca 66
||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 207 gaattcactctttatta-accttgtcttatagcccttcttcatatacggcaaatacatca 265
Query: 67 acagaactgaaaataggatgctggtcaccatttatttcatggaaaaaa-accaagtttca 125
||||||||||||| || |||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 266 acagaactgaaaacagaatgctggtcaccatttttttcatggaaaaaaccccaagtttca 325
Query: 126 tggaaagtgatgagaacatccaacatgtggggtgacagtgagttctcattgtcccgccca 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tggaaagtgatgagaacatccaacatgtggggtgacagtgagttctcattgtcccgccca 385
Query: 186 ctc-aatgataaacgttgggggaagacattggatactgtggatgatatacgaagcccaac 244
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 -tccaatgataaacgttgggggaagacattggatactgtggatgatatacgaagcccaac 444
Query: 245 actcccactgcttacaaagaaaatagacgacattaaaaatgcctcttctcccttggagtt 304
| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 445 attcccactgcttacaaagaaaacagacgacattaaaaacgcctcttctcccttggagtt 504
Query: 305 tggattagctatgttgagtgtcaccaggaggagatgacatttttctgtataaaaagagat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggattagctatgttgagtgtcaccaggaggagatgacatttttctgtataaaaagagat 564
Query: 365 gccagggctcctt--atgatattatttgattttcatatcttttggaat 410
||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct: 565 gccagggct--tttcatgatattatttgattttcatatcttctggaat 610
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space: 321201
Effective search space used: 321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no100_e04.g1 MSMg01no100_e04.g1 CHROMAT_FILE:
MSMg01no100_e04.g1 PHD_FILE: MSMg01no100_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:04 2005
(512 letters)
>mm_chr16_45903459_45904370
Length = 912
Score = 920 bits (476), Expect = 0.0
Identities = 503/512 (98%)
Strand = Plus / Minus
Query: 1 tctttccccctctagctggcactaggcttttagctctttctttctcccactgtggggttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tctttccccctctagctggcactaggcttttagctctttctttctcccactgtggggttc 653
Query: 61 ctggaaaaattctaaattcccaggaaccattgtttgaaccctctgaaagccaaattgagg 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 652 ctggaaaaattctaaattcccaggaaccattgtttgaaccctctgatagccaaattgagg 593
Query: 121 ggtgcaaatatctctttagagttactctccctccctgccagagcagttccaaggatggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ggtgcaaatatctctttagagttactctccctccctgccagagcagttccaaggatggca 533
Query: 181 cctaagcatcgaccccgcctcgtcccgccccgcctgttgaaccttttcctctgttcgaca 240
||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 532 cctaagcatcggccccgccccgccccgccccgcctgttgaaccttttcctctgttcgaca 473
Query: 241 ggcctgcctattggttgtataaagacgaactctaaatggtgccccagggttcaaggcaga 300
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 472 ggtctgcctattggttgtataaagacgaactctaaatggtgccccagggtccaaggcaga 413
Query: 301 ggtgggatgactcacagctcctgacttaacaagaggaagtctctggaggcccaaattgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ggtgggatgactcacagctcctgacttaacaagaggaagtctctggaggcccaaattgta 353
Query: 361 aactataaacaccttcctggtacctcctgaaggattacatttgatgggcattcccatgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aactataaacaccttcctggtacctcctgaaggattacatttgatgggcattcccatgaa 293
Query: 421 ggctgacttacctgagatttccccaaatcatatggaaataaaacctaaacagacactttt 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 292 ggctgacttacctgagatttccccaaatcgtatggaaataaaacctaaacagacactttt 233
Query: 481 cctctgccttttgctgcctgttcagtaaggac 512
||| ||| ||||||||||||||||||||||||
Sbjct: 232 cctgtgctttttgctgcctgttcagtaaggac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
