BAC Information

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BAC

Clone NameMSMg01-100F20
Chromosome16 (Build37)
Map Location 17,466,008 - 17,466,431
singlet/doubletsinglet
Overlap geneCrkl
Upstream geneFgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29
Downstream geneAifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100F20.T7 (MSMg01no100_f20.b1)MSMg01-100F20.TJ (MSMg01no100_f20.g1)
ACCAG316084AG316085
length702694
length of high quality
(start - end)
473 (58 - 530)281 (56 - 336)
definitionCHROMAT_FILE: MSMg01no100_f20.b1 PHD_FILE: MSMg01no100_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:12 2005CHROMAT_FILE: MSMg01no100_f20.g1 PHD_FILE: MSMg01no100_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATTC
TTACCACCACATGGTGGCTTACAGCCATCTGTAATAGGATCCAGTGCCCT
CCTATGATGTGTCCAAGGAGAACCATGATGTACTCACATAGATAAAATAA
ATACAATCTTTAAAATAAAAAAGAAAGAAAGAATAGGTAGGTAGATCTAA
GACTTTAAGACAGCCATAAACTGGCTGAGCGTGTTGGCATACCTCTAATT
TCAGAACTTGGAGAGGCAGAGGCAGGTATGTCTCTTGAGTTTGAAGCCAG
CCTGGTTTACAGAGTGAGTTCAGGCCAGCCAGGCTGTTTTGAGACTGTCT
CAAACAAAACAAAAGCAAATGCTTTAAAGGCCAGTAAAATTGCTCAGCAG
GTAAAGGTCCTTGCCATCAAACCTGAGAGCATAAGTTTAATCTCTGGAAT
CTATCTACATGGTTGAAGGAGAGAATGGACTCCTGCAAGTTACCCTTTGA
CCTCTGTGTACACTTCAGACGTGTGCATACCCAAAAATACACACTAAATA
AACTAACATAAAACACTTCAAGGCAGCTATAGGGACTATTATTACTTATG
TCACTAATCAGAAGAAAGAAAATTACCTATAGCTACGCGCCGATATAACA
TATTACACGCTCAATTAACAAAAAATTTCACAAACACATTAACAGTGATC
CT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCT
CTGCCTCCACGTGTGCCACCACGCCTGGCCCTGGGAGAATGTTTTGCTGA
GAAGAGACACGTGGTGTTTTTCTGGAAACAGCCTGGAAAAAGGGCATGTG
CTGTTTTGCTAGAGCAGGCGCTTGAGAGAACACAGGATGTTTGGGAAGGA
TATAAATATAGCTCAAAACAGAACCTGTTGGCTCACCTTGCCACTCTTGT
GTTCTGGTGGTTTCTTGCTGCTTCCACAGCCTCAGGCCAATTGTCAACAC
CTCACAGTTTCTCCTGGATGAACTGCCATTGCTGAATTGTGAATGCTGTT
CGTGATGCATGGAGCTACCGTGCTGATTCCTGTGAACTGAACTGCTGTCC
TCCTGACAAAGATTGAAAATGCCCCAAAGAACTATTTCTAATCAGGTCCA
CATCCTCCTTTGCTCTATTAACCTTCCTCTCCACTACCTCTAGGGTTCGG
AGCCCTATTAGCCATCTTATAGTATTTCAGTTCTCCTCTATATAAGAAGG
GTCGGGAGACATTTTTTTCTACCTCCTTGCCCCTTTAGCCGGTTCACTTC
CTTGCTCTCACCCCCCGCTCTTCCCCCTTTCATTAGCTCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_f20.b1 MSMg01no100_f20.b1 CHROMAT_FILE:
MSMg01no100_f20.b1 PHD_FILE: MSMg01no100_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:12 2005
         (473 letters)



>mm_chr16_17465759_17466631
          Length = 873

 Score =  687 bits (355), Expect = 0.0
 Identities = 420/473 (88%), Gaps = 49/473 (10%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatggtggcttacagccatctgtaataggatccagtgccctcctatgatgtgtccaag 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 250 cacatggtggcttacagccatctgtaataggatccggtgccctcctatgatgtgtccaag 309

                                                                       
Query: 61  gagaaccatgatgtactcacatagataaaataaatacaatctttaaaataaaaaagaaag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 310 gagaaccatgatgtactcacatagataaaataaatacaatctttaaaataaaaaaggaag 369

                                                                       
Query: 121 aaagaataggtaggtagatctaagactttaagacagccataaactggctgagcgtgttgg 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||            
Sbjct: 370 aaagaatag-taggtagatctaagactttaagacagccataaactggc------------ 416

                                                                       
Query: 181 catacctctaatttcagaacttggagaggcagaggcaggtatgtctcttgagtttgaagc 240
                                               ||||||||||||||||||||||||
Sbjct: 417 ------------------------------------aggtatgtctcttgagtttgaagc 440

                                                                       
Query: 241 cagcctggtttacagagtgagttcaggccagccaggctgttttgagactgtctcaaacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcctggtttacagagtgagttcaggccagccaggctgttttgagactgtctcaaacaa 500

                                                                       
Query: 301 aacaaaagcaaatgctttaaaggccagtaaaattgctcagcaggtaaaggtccttgccat 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 aacaaaagcaaatgctttaaaggccagtgaaattgctcagcaggtaaaggtccttgccat 560

                                                                       
Query: 361 caaacctgagagcataagtttaatctctggaatctatctacatggttgaaggagagaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaacctgagagcataagtttaatctctggaatctatctacatggttgaaggagagaatg 620

                                                                
Query: 421 gactcctgcaagttaccctttgacctctgtgtacacttcagacgtgtgcatac 473
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 gactcctgcaagttaccctttgacctctgtgtacacttcagacatgtgcatac 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)