BAC Information

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BAC

Clone NameMSMg01-100H11
Chromosome16 (Build37)
Map Location 83,616,475 - 83,742,576
singlet/doubletdoublet
Overlap genenone
Upstream geneEG545172, LOC100039572
Downstream geneEG621729, LOC640489, LOC665664, LOC547311, LOC100039893, LOC100039634, Mrpl39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100H11.T7 (MSMg01no100_h11.b1)MSMg01-100H11.TJ (MSMg01no100_h11.g1)
ACCAG316162AG316163
length778691
length of high quality
(start - end)
234 (124 - 357)464 (44 - 507)
definitionCHROMAT_FILE: MSMg01no100_h11.b1 PHD_FILE: MSMg01no100_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:20 2005CHROMAT_FILE: MSMg01no100_h11.g1 PHD_FILE: MSMg01no100_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,742,343 - 83,742,576)(83,616,475 - 83,616,931)
sequence
NNNNCCCCNNNNNCCNNCCCCCCCCCTTNNTCCTCCTNCCNTNTCTACTC
CNNNNCTCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTAGTACCGAATGATCAGCACTAAGAAAACATGGGGTGA
AACTAAGGCTGATCCTTGTCCCTCAAACTTGTAGACATTTACTTAGAGTG
TTTTGCTTTCATTTATGTTGAATAAGCAATCTAATATTTTCTGAACTCTC
TTTTCTAGGCCAGGATAATTTTACCAAGTAAAATTACTTGGTAAAAGTAA
GGCCTGACAGAACGTGAGTTCATGGCTGTCTGACAGTAATGTGTAATTCT
CCGGTGAATGAACAACAAGCATAACAACAAAAGTACGAAGGAGTTGGCTT
TCTGGTTTCAAATAATCACTGCTCCATCTTCTTCAGAGAGTCAGCAGCCA
AGAAGCAGAGCAGTTCGCTTGAGATCCACAGCTGAAATGCCGAACGAAGA
ACATGATGGCTTTGGCCTCTCGTAAACTATATGTTTCCCAACTTTCCTAT
ATCAAATATCCAAATTTCCCCACTCCTTGAACCCCCAGACCCAATTCTTC
AGCCGGACCTTTGAATCTGTACCGCTTCATGATACTTCCTCCACCCCCTA
TCCTCGCCCAAGCTCACAACCGCATCCGCCACTCGCCTACCCCCCCCTTT
CCCCGGTTCTAACTCTTCCTTACCCACCCTACTCCTCCCTGTTTATGCCC
TCATCCTGTCCCTATACTCAATTGCTAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCCCGCGGAA
TCACTGACTCTGTTTTGTCAGACAGGAGTTGCTGGTCCCAAATATGCCTG
TTTTTGTTAGACTCCTTAAAAATCGGGATAATTTTGTATAGTGAACTTTA
TGTGGTTAAAGGATTCGGTCTGGCTTTTGAGAAGGAAGCTGCTTTGGTTC
TCACATAGTATGATGTACTCTAGGTCATGGGCTTTAACTCACAGAGGTGG
GATTAATGAAAGCAGGCGCACACAATTCCTGTGTAGGGAGAGGAGAAGCT
CCTGCATGAAGCTGACTGAGTCCAGGTTGCCAGGGTTTTTTCAAGGTGCC
CCTGAATCATCAGACGCGGTTACAGAGGACAACACGATTTACAACTACAC
TGACATTTGATTTATGTTGAGAAATTTTTATCTTTATTTAAGCCACATGT
CTATAGAAAAGAAAAAAGTATAGTTTAAAACTTCAAAAGCAGTGCACTCT
CAATGACAAAAGAATGTATTAAATACTCCTTATCAAGACAGATGTAAGCT
CTGTGCATGAAGCTGTGTTTTAAAGAGAGAAAAAAATTGATTTTACTCTA
GATCGTCCTTACTGACTAGCTCTTTGATTGAAACATGCATTGTATGAAGC
AATGTGACAGCACAGTTTATTAAGAGTATTTCCTGCTGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_h11.b1 MSMg01no100_h11.b1 CHROMAT_FILE:
MSMg01no100_h11.b1 PHD_FILE: MSMg01no100_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:20 2005
         (234 letters)



>mm_chr16_83742143_83742776
          Length = 634

 Score =  445 bits (230), Expect = e-129
 Identities = 233/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatcagcactaagaaaacatggggtgaaactaaggctgatccttgtccctcaaacttgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gatcagcactaagaaaacatggggtgaaactaaggctgatccttgtccctcaaacttgta 375

                                                                       
Query: 61  gacatttacttagagtgttttgctttcatttatgttgaataagcaatctaatattttctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gacatttacttagagtgttttgctttcatttatgttgaataagcaatctaatattttctg 315

                                                                       
Query: 121 aactctcttttctaggccaggataattttaccaagtaaaattacttggtaaaagtaaggc 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aactctcttttctaggcaaggataattttaccaagtaaaattacttggtaaaagtaaggc 255

                                                                 
Query: 181 ctgacagaacgtgagttcatggctgtctgacagtaatgtgtaattctccggtga 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctgacagaacgtgagttcatggctgtctgacagtaatgtgtaattctccggtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no100_h11.g1 MSMg01no100_h11.g1 CHROMAT_FILE:
MSMg01no100_h11.g1 PHD_FILE: MSMg01no100_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:20 2005
         (464 letters)



>mm_chr16_83616268_83617131
          Length = 864

 Score =  837 bits (433), Expect = 0.0
 Identities = 451/457 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   tcactgactctgttttgtcagacaggagttgctggtcccaaatatgcctgtttttgttag 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tcactgactctgttttgtcagacaggagttgctggtcccaaatatgcctgtttttgttag 267

                                                                       
Query: 68  actccttaaaaatcgggataattttgtatagtgaactttatgtggttaaaggattcggtc 127
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 268 actccttaaaaatcgggataattttgtatggtgaactttatgtggttaaaggattcggtc 327

                                                                       
Query: 128 tggcttttgagaaggaagctgctttggttctcacatagtatgatgtactctaggtcatgg 187
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct: 328 tggcttttgagaaggaagctgctttggttctcacatagtatgatgcactctaggtcatgc 387

                                                                       
Query: 188 gctttaactcacagaggtgggattaatgaaagcaggcgcacacaattcctgtgtagggag 247
           |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 388 gctttaactcacagaggtggaattaatgaaagcaggcgcacacaattccggtgtagggag 447

                                                                       
Query: 248 aggagaagctcctgcatgaagctgactgagtccaggttgccagggttttttcaaggtgcc 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aggagaagctcctgcatgaagctgactgagtccaggttgccagggttttttcaaggtgcc 507

                                                                       
Query: 308 cctgaatcatcagacgcggttacagaggacaacacgatttacaactacactgacatttga 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cctgaatcatcagacgcggttacagaggacaacacgatttacaactacactgacatttga 567

                                                                       
Query: 368 tttatgttgagaaatttttatctttatttaagccacatgtctatagaaaagaaaaaagta 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tttatgttgagaaatttttatctttatttaagccacatgtctatagaaaagaaaaaagta 627

                                                
Query: 428 tagtttaaaacttcaaaagcagtgcactctcaatgac 464
           ||||| |||||||||||||||||||||||||||||||
Sbjct: 628 tagttcaaaacttcaaaagcagtgcactctcaatgac 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)