BAC Information

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BAC

Clone NameMSMg01-100K14
Chromosome16 (Build37)
Map Location 57,441,059 - 57,604,914
singlet/doubletdoublet
Overlap gene2610528E23Rik, 4631422O05Rik
Upstream geneAbi3bp, Tfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c
Downstream geneCol8a1, LOC435480, LOC629342, LOC100043477, Dcbld2, St3gal6, LOC100043480
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100K14.T7 (MSMg01no100_k14.b1)MSMg01-100K14.TJ (MSMg01no100_k14.g1)
ACCAG316301AG316302
length718692
length of high quality
(start - end)
184 (68 - 251)470 (56 - 525)
definitionCHROMAT_FILE: MSMg01no100_k14.b1 PHD_FILE: MSMg01no100_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:36 2005CHROMAT_FILE: MSMg01no100_k14.g1 PHD_FILE: MSMg01no100_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,441,059 - 57,441,238)(57,604,445 - 57,604,914)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
GCATTTCATTAGAGGTCTGGGCAAGCTTGAAATAGTGAGCACACTGGCTC
TAAGAAAACCCCAAACCCGTTATCCCCTAATAAAACGGTCTTTGTAATGA
ACTAATAAAAAACCGGCCACATAAATGTGCCTTTGAAAATTTTAAATTAG
ATCAGTAAAAATGAACATATAGAATTCTAAGACCATTCTAAGACTCATAG
TATTGTGGTAATTCCCACTTTGTCTGATATGGTAAATATGAGAAGGGTTA
AGGAAGACGGATGAATTCTGGAGTGATGCGCTGCGCAACTGAGGTCCACA
TACCATTAGCACGCTCGCTGGCAGGATATATAGCTCATACGCACTTTCTC
TGCTGCCCCCACCTTTTCAAACGCATCTTGCCAGTCCATGCCCCGTCTTG
CCTTCTCGCTATCTCTCTCTCTTTTCCCCCTCTTTTCCAGCCCCCCAGTT
CGCTATATTTATCGTAACATTAATTTATACCCACCGTACTTCAATGCAAT
CTCTTTTTTTTCTCCTCCCTGATTAATTTCTCCCCTCTTTTTCTCTCTAC
CCAACTCGTTTTATCTTTCTCTATCCTATGCCCTTAACCCGTCCTTTTTC
GCCGATGTTATACACCTTGTTTTCCCCCTCTCCCTTATTCACTTTCTTTA
ACCCCCTGCTCTTTCCCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAAACATCTGGATGGCTTCTAAAGTATTCAGTGGTTAATAGGAATA
GTGTTGTAAACCTGCCTTTCTCCACACTTCCATGTGTCAGTCCCCACAAC
CCATCAGTCTCACACAGGCTTGAAAGGATGTGGCTATGTTTCTTTGTTTC
CTTTATTTCCTGTTGTGTCTCCCTCCACAAGGTTTCCTGAGTCTTTCTTT
GCATTTTGCTCTGTGGACCTATATGTTGTTCTAACTTGTATGAACCACTG
TAGTAAGCTCAAAATAGAGGCCTCAGCATCAATATTTGCCCCTCAGCTAC
CAGAGAATTCAGTCCCCACCGGCTTACCCTGGCTCAGCAGCGCTGCTCCT
CACTTGCTCTGGTGCTCAACAGGCTCCATTCCTTTTGTCTCAAGCTCTTG
TAATTCCTTGCTGTCCTTCTGATGTAATAACTAGCTGTTAACATAGGAAC
TCAGTTCAGACCTCTGTTAAACACAAGAGAGGAAATGAAAGGTCTTCCAC
ATTTATTAAGGGTATTTTTCATGAAACTCCTGGATACCTAGCATGAAATG
TACGCACGGTTTGCTAAATCATCACCTCCCTGATAAGCTGCTCCCTGGTA
GCCTGTAGTATTGCTTGGGTGACTTCTGATGTTGGCATGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_k14.b1 MSMg01no100_k14.b1 CHROMAT_FILE:
MSMg01no100_k14.b1 PHD_FILE: MSMg01no100_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:36 2005
         (184 letters)



>mm_chr16_57440859_57441442
          Length = 584

 Score =  340 bits (176), Expect = 2e-98
 Identities = 179/180 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggcaagcttgaaatagtgagcacactggctctaagaaaaccccaaacccgttatcccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggcaagcttgaaatagtgagcacactggctctaagaaaaccccaaacccgttatcccc 260

                                                                       
Query: 61  taataaaacggtctttgtaatgaactaataaaaaaccggccacataaatgtgcctttgaa 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taataaaacgggctttgtaatgaactaataaaaaaccggccacataaatgtgcctttgaa 320

                                                                       
Query: 121 aattttaaattagatcagtaaaaatgaacatatagaattctaagaccattctaagactca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattttaaattagatcagtaaaaatgaacatatagaattctaagaccattctaagactca 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no100_k14.g1 MSMg01no100_k14.g1 CHROMAT_FILE:
MSMg01no100_k14.g1 PHD_FILE: MSMg01no100_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:36 2005
         (470 letters)



>mm_chr16_57604245_57605114
          Length = 870

 Score =  878 bits (454), Expect = 0.0
 Identities = 466/470 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacatctggatggcttctaaagtattcagtggttaataggaatagtgttgtaaacctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 aaacatctggatggcttctaaagtattcagtggttaataggaatagtgttgtaaacctgc 611

                                                                       
Query: 61  ctttctccacacttccatgtgtcagtccccacaacccatcagtctcacacaggcttgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 610 ctttctccacacttccatgtgtcagtccccacaacccatcagtctcacacaggcttggaa 551

                                                                       
Query: 121 ggatgtggctatgtttctttgtttcctttatttcctgttgtgtctccctccacaaggttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ggatgtggctatgtttctttgtttcctttatttcctgttgtgtctccctccacaaggttt 491

                                                                       
Query: 181 cctgagtctttctttgcattttgctctgtggacctatatgttgttctaacttgtatgaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cctgagtctttctttgcattttgctctgtggacctatatgttgttctaacttgtatgaac 431

                                                                       
Query: 241 cactgtagtaagctcaaaatagaggcctcagcatcaatatttgcccctcagctaccagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cactgtagtaagctcaaaatagaggcctcagcatcaatatttgcccctcagctaccagag 371

                                                                       
Query: 301 aattcagtccccaccggcttaccctggctcagcagcgctgctcctcacttgctctggtgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aattcagtccccaccggcttaccctggctcagcagcgctgctcctcacttgctctggtgc 311

                                                                       
Query: 361 tcaacaggctccattccttttgtctcaagctcttgtaattccttgctgtccttctgatgt 420
           ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 310 tcaacaggctccattccttttgtctcaggctcttgtagttccttgctgtccttctgatgt 251

                                                             
Query: 421 aataactagctgttaacataggaactcagttcagacctctgttaaacaca 470
           | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agtaactagctgttaacataggaactcagttcagacctctgttaaacaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)