BAC Information

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BAC

Clone NameMSMg01-101C15
Chromosome16 (Build37)
Map Location 8,818,720 - 8,819,014
singlet/doubletsinglet
Overlap genenone
Upstream gene4930511J11Rik, BC024814, Abat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7
Downstream geneLOC665231, 1810013L24Rik, LOC100043106, Grin2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101C15.T7 (MSMg01no101_c15.b1)MSMg01-101C15.TJ (MSMg01no101_c15.g1)
ACCAG316647AG316648
length692800
length of high quality
(start - end)
295 (60 - 354)---
definitionCHROMAT_FILE: MSMg01no101_c15.b1 PHD_FILE: MSMg01no101_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:16 2005CHROMAT_FILE: MSMg01no101_c15.g1 PHD_FILE: MSMg01no101_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTAAACGACTCCTATTCGAAGAGGATCCGCGGAATTCCCTTAT
TACTTATCACTTGTAGTCATTGTGTTTATTCATTTACTTATGTAATGTGC
CTGCACTTCCAAGGAAGATGTGCAAAATATGCTAAAGGGAAGTATTAAGT
TGCTGGCAGGGAAGTGGACCTGGGCTTTGGTATCTCTTCAGGCAACCTCT
CCCAAGTGCTGGTGTTTTGTTTGGATAATCTTGTTTCTCCTGTTTGCCTG
GTGCTTGCCATGTGGCCCAGGTTGATCTTGAACACCCGGCATCCATTCTT
CCCCTGTTGAGTACTAGGATTGGCAATATAGGTTTATGTCCATGCTGTAA
AGATTTGCTCGGCGGCTGAGGTTGCTCAGGGATGTCACTGGGGGTGGGCG
CCCCTGGTTTGGGCTAAAAAAATAGTGTAAGGTGGCCTATGGTAAAATCT
AATTCCCTCGGTTATTTATGTCTCAATACCGTGCTTTCCGTGTTTACTAT
AAGATGTCACGAAAGTGTTATCGTATAACCTTCGTAACTGACCGTTGCAT
TTTGCAATTTGTTATAATACTCCCCAGTCCCGCCATGGTATTTTTCCAAC
TCTATCACATGACATTACCCACGTTCTCTTTTTCCCCTTCATTCATATTT
TTATCTCCCCCTAATTATACCCTCCCTATTTTATTCTTTTTT
ACAACACACACAACTACACCCCTACACCCCCACTCCTCTCCCTCCCTCTT
TCTTTCCTACAATGATATGCGTAGGCCTGGCGGCCGCCTGTTTTCACACG
AGGXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAAACCCTGGACCCCAAT
GATTGGAAGAAGAGACGACTTGGAGTATATTTTATGTCATATTTTATGGC
ATACTTTATGACAACAAACCTAGCTTCTTAAAGCTGTGACTTATGGAAAC
ACATCTATGTGACCCACTTCCTCCAAAGAGACCCCTTCACAGACCACTCA
GTATGAATGGAAGGCTATAACTAGATGACGAATTTTCCGTCCTTAGAGTC
AATCGCTTCTCAACAGCCAACTGCCAGGGATTTTTTCTGCACCGCAAGAC
CCTACTGAGCGCAAATCTTATGACTGCCTGCCACCAAAGTAGAAAGCTGC
TATGTGTGCCTTTCATAGTACATAGAGGCCCTTGGTTGTTTTAATAGGCA
GTGATTTTGGGATGCTAAGTCTGGACCTATGATACGGGAATGCGGCCTAC
TGAGGAGTGGTAGTTCGGGTTTAGCTGTCTCACCTAAATGGCTCGTGGTA
GCGGTGCACCCTCTAGCTCACCGGAATAGGGGGAACGGGTGGAACTAAAC
AGGGATTTGGGTTAGGTGATGGCCGGCTTTGAGGGTGTAGACAGCTTCAA
GTGAGCCTGGACCGTTGATGGACGCGGAGAGCTCGATGACTATATTGAAT
ATGAGTCGTTAAGGTCTCGGTACTTCGCCCCGATTTTATATATTTGAAAN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_c15.b1 MSMg01no101_c15.b1 CHROMAT_FILE:
MSMg01no101_c15.b1 PHD_FILE: MSMg01no101_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:16 2005
         (295 letters)



>mm_chr16_8818520_8819214
          Length = 695

 Score =  555 bits (287), Expect = e-162
 Identities = 293/295 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgtagtcattgtgtttattcatttacttatgtaatgtgcctgcacttccaaggaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgtagtcattgtgtttattcatttacttatgtaatgtgcctgcacttccaaggaagat 260

                                                                       
Query: 61  gtgcaaaatatgctaaagggaagtattaagttgctggcagggaagtggacctgggctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcaaaatatgctaaagggaagtattaagttgctggcagggaagtggacctgggctttg 320

                                                                       
Query: 121 gtatctcttcaggcaacctctcccaagtgctggtgttttgtttggataatcttgtttctc 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatctcctcaggcaacctctcccaagtgctggtgttttgtttggataatcttgtttctc 380

                                                                       
Query: 181 ctgtttgcctggtgcttgccatgtggcccaggttgatcttgaacacccggcatccattct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtttgcctggtgcttgccatgtggcccaggttgatcttgaacacccggcatccattct 440

                                                                  
Query: 241 tcccctgttgagtactaggattggcaatataggtttatgtccatgctgtaaagat 295
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcccctgctgagtactaggattggcaatataggtttatgtccatgctgtaaagat 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)