BAC Information

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BAC

Clone NameMSMg01-101F15
Chromosome16 (Build37)
Map Location 43,173,366 - 43,250,488
singlet/doubletdoublet
Overlap genenone
Upstream geneGap43, BC002163
Downstream geneLOC667484, Zbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101F15.T7 (MSMg01no101_f15.b1)MSMg01-101F15.TJ (MSMg01no101_f15.g1)
ACCAG316787AG316788
length788742
length of high quality
(start - end)
238 (135 - 372)455 (69 - 523)
definitionCHROMAT_FILE: MSMg01no101_f15.b1 PHD_FILE: MSMg01no101_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:31 2005CHROMAT_FILE: MSMg01no101_f15.g1 PHD_FILE: MSMg01no101_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,173,366 - 43,173,603)(43,250,034 - 43,250,488)
sequence
NTTTCCTCCTTNCCTTTCTTTTTCTTTTTCCTCCTTCTTCCCCNCNNNCA
AATACTTATAAATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCCCATAGTACCAGAAATAGAAGCATATTTCA
GGAAAACTCTAAGAGATTAGCCAGATGATTAGGCCAGGACATTTTAAGTT
CAGATTTTATGTAGAATTTCTATGGCATTATTTTAGTTGACTGAAGAATG
CTAGAAAATCTAAAGATATTTCAAATTAAAAATATCTTTTTATTACCCTA
TGATTTCTCTAAATTGTTTTCTTAAGATGTAGTCTGAACTCATATTGATT
TGTAAACTCATAGGCAACTGATAAACCAATTAAATTAATCTAATGGAACC
ATTCTCCCATAATTTTGAAAGAATCCGATTTTATATCTAGTGAACTCTCA
TGGTAACTATCTTTTCATTCGGATTTTGTTCATTTCCATGGACATTATGA
AAATGTAAATTATGTGTTAAAGTACTATAGCAGATACTTTTGGTAGATCT
GCATATTGCCTCATAGNTTTGAATTTCTTGCTTCAATTCTTTTCCTTGTT
CATGGTACGTCTTTTCCTTTTATCCTTTTTTGTCACTACTTTCGTGTCAT
GCTTCCGCAGCTGTTTTTCATTTTGTTCTGGGTTTTGTTCTTTTTGTGCC
CGAATTCCATTTGTATCATGAACATTTTTTATTTTCTTTATATGATTATT
TATATATGTTTTTTGTTTTATCTTTTTTTTTTCTTGTT
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAATCTGAGTTTTTCACACAGCAATCCAGACAT
GATTTGAAACTCTCCCAGATCTCTTTATCACTCCGACATGTTAGAGAAGC
AAGGCGGTATGCAGTCCCAGCGCAGCAGGTGTTTCCTGAGGAGGGGACAG
TACTAGGACAGGGCTGTCCTCAGCTTCTTTGCAGTAGCTGTCCTGCCTTT
GGCTGTCCACCGTGCTGCACTTTGTTGTCATGTGTTTGCAGAGGAGCAAA
TGTGTTTGCATTGGAACTCTTTAATGAAATATTGTCACAGTGGAATTTGG
CTATAGTTCATAAACTGGTTCATATCTATATATTGACCATAAAGAGTGAA
AACAAGGATGATTTATTTCTTTACTGCTCTCATTAACCCAAAAGGCTGTA
CAAGACTGGTTTTAAAATAATCTTTGGCCAAAACTCATCACTAAAATGGG
CTCTTCCACAAGTTTAAGAAGATAAACTACTAGATCTGTGTGTGCGTGTG
TGTTCGCGTGTGTGCATGTGCGTGTGTCCAATTACTGTTCTTTACAGGGC
TATATTACACTGTCAGATTCCAAGGCAGCTGAGAGTCTCTGATCACCAAT
ATAAAGTGAAGGAAAATACACTGTCTTGTGAAGACAATAGGATTAAAAGC
TGGAAGGTCTAGGTTCCTGTCTATAGTCTGACACTTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_f15.b1 MSMg01no101_f15.b1 CHROMAT_FILE:
MSMg01no101_f15.b1 PHD_FILE: MSMg01no101_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:31 2005
         (238 letters)



>mm_chr16_43173166_43173803
          Length = 638

 Score =  445 bits (230), Expect = e-129
 Identities = 236/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagaagcatatttcaggaaaactctaagagattagccagatgattaggccaggacattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagaagcatatttcaggaaaactctaagagattagccagatgattaggccaggacattt 260

                                                                       
Query: 61  taagttcagattttatgtagaatttctatggcattattttagttgactgaagaatgctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagttcagattttatgtagaatttctatggcattattttagttgactgaagaatgctag 320

                                                                       
Query: 121 aaaatctaaagatatttcaaattaaaaatatctttttattaccctatgatttctctaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatctaaagatatttcaaattaaaaatatctttttattaccctatgatttctctaaat 380

                                                                     
Query: 181 tgttttcttaagatgtagtctgaactcatattgatttgtaaactcataggcaactgat 238
           |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 381 tgttttcttaagatgtagtcagaactcatattgatttgtaaactcaaaggcaactgat 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no101_f15.g1 MSMg01no101_f15.g1 CHROMAT_FILE:
MSMg01no101_f15.g1 PHD_FILE: MSMg01no101_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:31 2005
         (455 letters)



>mm_chr16_43249834_43250688
          Length = 855

 Score =  880 bits (455), Expect = 0.0
 Identities = 455/455 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatctgagtttttcacacagcaatccagacatgatttgaaactctcccagatctctttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aatctgagtttttcacacagcaatccagacatgatttgaaactctcccagatctctttat 596

                                                                       
Query: 61  cactccgacatgttagagaagcaaggcggtatgcagtcccagcgcagcaggtgtttcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 cactccgacatgttagagaagcaaggcggtatgcagtcccagcgcagcaggtgtttcctg 536

                                                                       
Query: 121 aggaggggacagtactaggacagggctgtcctcagcttctttgcagtagctgtcctgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aggaggggacagtactaggacagggctgtcctcagcttctttgcagtagctgtcctgcct 476

                                                                       
Query: 181 ttggctgtccaccgtgctgcactttgttgtcatgtgtttgcagaggagcaaatgtgtttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ttggctgtccaccgtgctgcactttgttgtcatgtgtttgcagaggagcaaatgtgtttg 416

                                                                       
Query: 241 cattggaactctttaatgaaatattgtcacagtggaatttggctatagttcataaactgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cattggaactctttaatgaaatattgtcacagtggaatttggctatagttcataaactgg 356

                                                                       
Query: 301 ttcatatctatatattgaccataaagagtgaaaacaaggatgatttatttctttactgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ttcatatctatatattgaccataaagagtgaaaacaaggatgatttatttctttactgct 296

                                                                       
Query: 361 ctcattaacccaaaaggctgtacaagactggttttaaaataatctttggccaaaactcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ctcattaacccaaaaggctgtacaagactggttttaaaataatctttggccaaaactcat 236

                                              
Query: 421 cactaaaatgggctcttccacaagtttaagaagat 455
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 cactaaaatgggctcttccacaagtttaagaagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)