Query= MSMg01no102_k17.b1 MSMg01no102_k17.b1 CHROMAT_FILE:
MSMg01no102_k17.b1 PHD_FILE: MSMg01no102_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:20 2005
(225 letters)
>mm_chr16_34472219_34472844
Length = 626
Score = 398 bits (206), Expect = e-115
Identities = 218/224 (97%), Gaps = 5/224 (2%)
Strand = Plus / Plus
Query: 4 gaattcatctataatttc---gcctggggctccacgtgccaccttttcctgccgggcagt 60
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcatctataaa--cacagcctggggctccacgtgccaccttttcctgccgggcagt 261
Query: 61 ggcagttgaaattttactatgagaggttggtttccttatctcagcatgcttctcatacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggcagttgaaattttactatgagaggttggtttccttatctcagcatgcttctcatacat 321
Query: 121 tacaaactcttcagtgaggaatcgcccattaagctgttagcaatcatgagtaaagaggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tacaaactcttcagtgaggaatcgcccattaagctgttagcaatcatgagtaaagaggat 381
Query: 181 caggtgtctgcaggagcaagtattttaatgcctgggggaggagg 224
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 caggtgtctgcaggagcaagtattttaatgcctgggggaggagg 425
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 626
Length adjustment: 9
Effective length of query: 216
Effective length of database: 617
Effective search space: 133272
Effective search space used: 133272
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no102_k17.g1 MSMg01no102_k17.g1 CHROMAT_FILE:
MSMg01no102_k17.g1 PHD_FILE: MSMg01no102_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:20 2005
(428 letters)
>mm_chr16_34632188_34633015
Length = 828
Score = 795 bits (411), Expect = 0.0
Identities = 423/427 (99%), Gaps = 2/427 (0%)
Strand = Plus / Minus
Query: 1 tacatagttagaataggcattccgaacagaagctgtggaggctcacattgaattttacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tacatagttagaataggcattccgaacagaagctgtggaggctcacattgaattttacac 547
Query: 61 tttaaatatcaactacattttatgcacttatccaccacccaaaccaaaaaactcatgaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tttaaatatcaactacattttatgcacttatccaccacccaaaccaaaaaactcatgaca 487
Query: 121 gaattagaactagagaaacagttcactttctatcctctttcataacttgtggctattact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gaattagaactagagaaacagttcactttctatcctctttcataacttgtggctattact 427
Query: 181 tacagtcagtccttctttatgcctttttatttagttattcttgttttcttttcttcatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacagtcagtccttctttatgcctttttatttagttattcttgttttcttttcttcatgt 367
Query: 241 tacaatgcacccacatgtgtgtttgtttacacaggcacacatattcttggccagattctg 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 366 tacaatgcacccacatgtgtgtttgtttacacaggtacacatattcttggccagattctg 307
Query: 301 tatatgagaaagaacatga-tttttttttctttctgaaattgtatggctttgcttagtgt 359
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 306 tatatgagaaagaacatgattttttttttctttctgaatttgtatggctttgcttagtgt 247
Query: 360 tatatatcctgagtccataccttttttatttgactgaacaactgattcacacacacacac 419
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tatatatcctgagtccatacc-tttttatttgactgaacaactgattcacacacacacac 188
Query: 420 acacaca 426
|||||||
Sbjct: 187 acacaca 181
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
