Query= MSMg01no102_l21.b1 MSMg01no102_l21.b1 CHROMAT_FILE:
MSMg01no102_l21.b1 PHD_FILE: MSMg01no102_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:25 2005
(585 letters)
>mm_chr16_63640012_63640996
Length = 985
Score = 1089 bits (563), Expect = 0.0
Identities = 575/579 (99%)
Strand = Plus / Plus
Query: 7 gaattccagcatggctatccagcgaatgtctaacattcaaagactactgtctgttttcac 66
||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattccagcacggctatacagcaaatgtctaacattcaaagactactgtctgttttcac 266
Query: 67 cttttctaataattttcttaaacttgtggagcagcacttcatgtaacaaagagataatat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cttttctaataattttcttaaacttgtggagcagcacttcatgtaacaaagagataatat 326
Query: 127 atgagatccccaacgtgggaaacagcgataatttcatatggcaagtttgctaaccatgga 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atgagatccccaacgtgggaaacagcgataatttcatatggcaagtttgctaaccatgga 386
Query: 187 gccttgataattggtcatattgctatcaaggtaaaggtgttttccaaatgaagtaagatt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gccttgataattggtcatattgctatcaaggtaaaggtgttttccaaatgaagtaagatt 446
Query: 247 ctaaactaagagatttagggcaaagcatagcacacatgacaatattgatgggccttgtct 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ctaaactaagagatttagggcaaagcatagcacacatgacaatattgatgggccttgtct 506
Query: 307 agttggctggaatccacaaaaagaaaatcagctaaatcagaaatcagaattctgaattta 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 agttggctggaatccacaaaaagaaaatcagctaaatcagaaatcagaattctgaattta 566
Query: 367 acctgccaactttgatgtggcagggttcagtcaaccaggtttccagcttgccagaccaca 426
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 567 acctgccaactttgatgtggcagggttcagtcaaccaggtttccagcttgccagaccata 626
Query: 427 cagtggactttgaacttttcagaacaaagatagcatataccactttattaaaggtttttt 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 cagtggactttgaacttttcagaacaaagatagcatataccactttattaaaggtttttt 686
Query: 487 ctcactcacatgcctttaatcgtagcacttgggaggcagaggcaggcagatttctgagtt 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ctcactcacatgcctttaatcgtagcacttgggaggcagaggcaggcagatttctgagtt 746
Query: 547 tgaggcgagcctggtctacagagtgagttccaggacagc 585
|||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tgaggcgagcctggtctacagagtgagttccaggacagc 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no102_l21.g1 MSMg01no102_l21.g1 CHROMAT_FILE:
MSMg01no102_l21.g1 PHD_FILE: MSMg01no102_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:25 2005
(572 letters)
>mm_chr16_63703735_63704707
Length = 973
Score = 982 bits (508), Expect = 0.0
Identities = 547/560 (97%), Gaps = 3/560 (0%)
Strand = Plus / Minus
Query: 4 tattttctgtactcaggggaatttgtagtgctttgcctttaatgtcaggtcatcattatg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tattttctgtactcaggggaatttgtagtgctttgcctttaatgtcaggtcatcattatg 703
Query: 64 ttgtattacatgctatgtaccatgatttttattgattctattga-ccttttaaatattcc 122
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 702 ttgtattacatgctatgtaccatgatttttattgattctattgatcc-tttaaatattcc 644
Query: 123 ataatcaattgtatgcaccatattcaattgtatgagcttaaacataacatgataggaatt 182
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 643 ataatcaattgtatgcaccatattcaattgtatgagcttaagcataacatgataggaatt 584
Query: 183 ctggaaatcaaagatagttattaaaacacaaatacaagaggtgccagaaatgtcttccct 242
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ctggaaagcaaagatagttattaaaacacaaatacaagaggtgccagaaatgtcttccct 524
Query: 243 ttgtagagagaactgttacatcaaaactgaaaagtattacaactttctaagtatagcaat 302
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ttatagagagaactgttacatcaaaactgaaaagtattacaactttctaagtatagcaat 464
Query: 303 gccagtcttgggaaacaggatgctatcttaggtcatcaactgatgcatgagtgataggag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gccagtcttgggaaacaggatgctatcttaggtcatcaactgatgcatgagtgataggag 404
Query: 363 ccaatgaaaatctgtggcttcattttgtaaaatataagttgtatcaatgtttatgaaact 422
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 403 ccaatgaaaatctgtggcttcattttgtaaaatgtaagttgtatcaatgtttatgaaact 344
Query: 423 atcagtttaaaaattgatagtgtttgtgctttctgca-atacagaagtagtcaggcaaaa 481
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 343 atcagtttaaaaattgatagtgtctgtgctttctgctgatacagaagtagtcaggcaaaa 284
Query: 482 acacctgggtaggtgcaatacatagaaatcagtatacacagtaggaaatgtaaggaattt 541
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 acaattgggtaggtgcaatacatagaaatcagtatacacagtaggaaatgtaaggaattt 224
Query: 542 caggtgaagaaacaaggcag 561
||| |||| |||||||||||
Sbjct: 223 cagatgaaaaaacaaggcag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 973
Length adjustment: 10
Effective length of query: 562
Effective length of database: 963
Effective search space: 541206
Effective search space used: 541206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
