BAC Information

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BAC

Clone NameMSMg01-102M24
Chromosome16 (Build37)
Map Location 24,992,705 - 24,992,925
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433009, LOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik
Downstream gene5430420C16Rik, Trp63, LOC100043571, Leprel1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102M24.T7 (MSMg01no102_m24.b1)MSMg01-102M24.TJ (MSMg01no102_m24.g1)
ACCAG317856AG317857
length736696
length of high quality
(start - end)
222 (69 - 290)251 (70 - 320)
definitionCHROMAT_FILE: MSMg01no102_m24.b1 PHD_FILE: MSMg01no102_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:31 2005CHROMAT_FILE: MSMg01no102_m24.g1 PHD_FILE: MSMg01no102_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAATTTGCGGCGCTATACGACTCCTATAGTTCGAGAACGGCGGAATTCT
TTCGGAGTTGCTGATCTCTGTTTCCTTTTAAGCCCAGTTACTGTGATTCA
TTTTTTCACCAGTTGCTTTCCATATGGCCCTCTGAGACTGGGAATGCCTC
TCAGAGCGAGTTATGCTGCAAGAACATGAAGCCCCCACTCCATCAACACA
AATGAGCTCAACTTCTGACACGTTCGCAAACCACTTCAGCACCCTCTTTC
TGAACTCTGCAGAAGTGTGTGTGTGTGCGTGTGTGTGTGCGTGTGCGTGT
GTGTGCTACAATATTTTTTTTTTCTTCTAATACACTACATATAAATCATC
CCGATCTTTCTACGTCCTCCTCCCACCGCCCCTTCCCCCCTCTTTCTCCC
ACCTCCTTTTTCCCCTCTACTCTTTTTTCTATATTCCCCCCTCCTCTCTT
TTCTTTCCATCCCTTTCTCTCTCTTTTTCTTCCTTAACCCCCCCTTCCTC
ATCCCACTATGGCCACATTTTCCCTCTCTCCCTTTACACTCCTTATCTCT
CTTTTTCCCTCACTCCACTCATACTTTCCTCTTCCACAACTTTACCTTCC
GCCCTCACGTACCACCATCCTCTTCCTTCTTTTTTTATCTTCTTTCCCAT
CCCCCACTTTCTTCTCTTGTTCTTCCCTTTTCTTCCATATCTCCTCTCCT
TTTTCCACCCCTTTATTCCTTTTCTTTCCCATTCCC
ATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCCGAATTCATATTTTTAATAGCTGAGTACTCTATTATGTA
AATGCACCACATTTGCTGCATCCATTCCTCTGTTGCAGTACACATAGGTG
CTTTCCAGCTTCTGGCAGTTATAGATAAAGCTTCTAGGAACATAGTGGAG
CATGTGTCTGGCTAAAATCAACCAAGTAGAAACAAAAAGAACTATACAAA
GAATTAACCAAAACAGGAGCTGGTTCTTTGATAAAATCAACAGGATAGAT
AAACCCTTAGCCAAACTAACTATAATACACAGGGAAAGTATCCTAATTAA
CATCAGAAATGACAAGGCAGACCTAGCAACAGAAATTGAGGAAATCCACA
AAACTATCAGATCCTGCTACAAAGGCCTATATTCAACAAAACTGGAAAAT
CTGGATGACATGGACATTTTTCCCCACTTATACCCGATACCAAAGTTAAT
TCATGATCAGTTAAACCACCTAAACTCTCCCATAACCCCTAATGAAATAA
AACCATTCCTTGAAAGTCTCCTAACCTCCAAAAAACTCAAATATACATCC
CAGTACCCGCATTCAATGGATCTGTTTGATCCTATATCGGGCCCTTCCAA
CACACTTAATATTAATACTCTCCAAACTATTCCACACCCTACAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_m24.b1 MSMg01no102_m24.b1 CHROMAT_FILE:
MSMg01no102_m24.b1 PHD_FILE: MSMg01no102_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:31 2005
         (222 letters)



>mm_chr16_24992505_24993126
          Length = 622

 Score =  412 bits (213), Expect = e-120
 Identities = 219/221 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtttccttttaagcccagttactgtgattcattttttcaccagttgctttccatatggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 tgtttccttttaagcccagttactgtgattcattttttcaccagttgctttccatatggt 260

                                                                       
Query: 61  cctctgagactgggaatgcctctcagagcgagttatgctgcaagaacatgaagcccccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctctgagactgggaatgcctctcagagcgagttatgctgcaagaacatgaagcccccac 320

                                                                       
Query: 121 tccatcaacacaaatgagctcaacttctgacacgttcgcaaaccacttcagcaccctctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccatcaacacaaatgagctcaacttctgacacgttcgcaaaccacttcagcaccctctt 380

                                                    
Query: 181 tctgaactctgcagaagtgtgtgtgtgtgcgtgtgtgtgtg 221
           ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 tctgaactctgcagaagtgtgtgtgtgtgtgtgtgtgtgtg 421


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 622
Length adjustment: 9
Effective length of query: 213
Effective length of database: 613
Effective search space:   130569
Effective search space used:   130569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)