BAC Information

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BAC

Clone NameMSMg01-102P03
Chromosome16 (Build37)
Map Location 32,707,544 - 32,707,969
singlet/doubletsinglet
Overlap genenone
Upstream geneDlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265
Downstream geneLOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4, Zfp148, Slc12a8, 4632417D23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102P03.T7 (MSMg01no102_p03.b1)MSMg01-102P03.TJ (MSMg01no102_p03.g1)
ACCAG317954AG317955
length707770
length of high quality
(start - end)
82 (103 - 184)426 (130 - 555)
definitionCHROMAT_FILE: MSMg01no102_p03.b1 PHD_FILE: MSMg01no102_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:41 2005CHROMAT_FILE: MSMg01no102_p03.g1 PHD_FILE: MSMg01no102_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATCAXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCCACAAATGGGCGGA
TTTCGCACAGTTCCCACTATTGGCTTATTCAACATTAACAGAAAGAACAT
AGGGCATCAGGACTTTCTTCCTGTGGGCTGGGGGCTTATCTTTGTTCACA
TAGCAACCAGTTGATGTATGACTTTACCCGGCGCCAAGGGGCACTAGACT
GAGGGGAGATTCTTAGATAATATAGCCCTGCTGGTCCTTGTATCTTTACA
GTCAAGATCGTTCTTAGGAATGCCTTACCAACAGCCCTGCCCTGGTATGC
CTGGGGGCTGTTCTGCTTTGTTCTTGGCCCCAGGCCGGGCTGTGGCCTCC
TAAACTCACACGTTACAATATTTTATCTTCCTTCAGAACAATCACTTGAC
CCCACCAGATCTGATGCCCTCTTCTGATGCCCGCGCTACACGGTACACAT
ATGGCGTTTATACTTACCTCTTTGCTAATTTTTTTCATACTCATCAATCC
TCTCACCTTTTCTCTAGCGATTCACCACCTACTCCATCTTGTCTTTTTGA
TTACTACTCCCCCATTGTCTTTCCCTGTATCTCACTTTCTCACTCGTTCC
CTTGCGTTCCATCTTCAAACTTCTTTACCTTAATGCAACAACGTTCAACG
CAAAAGTTATCTACGCGTACCAGCCAATTTCCCAACCTGACTATCTTGTT
ATTACCC
NNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCTNNNNCCCCAT
ATTGCATATTTCGATGATGTGGGTAGCCTGGCGGCCGCCTGTTCAAAAAA
TGTAGGTGACCTATAGAATTCCTCGCGGAATTCCTAAACAGCCAAAGGCT
TGTTGCTTCTTCTCTCTGTGGGGCTCTCTGAATCTCTGTTGGAGCTGCCC
CTCCTGGGAGGATTAGCGCCCCTGAGAGTGGTAAGGACTCCCTCTTTACA
ACTTCTGGCTATCTACAGATAAGTTAGGTAGTTTAACAAGCCTAGAGGAC
AGAGTAAGGTACGTTTCCCAGAGCAGAGGACTCTTAACGTGAGTTACTTT
CCCTAAAGAACCTCACACTCAGGTGATCTGGCGGAGGGAGAGCTACTGCT
CGCCTCTGCCTGGGAGCCCACAACACGTGTTTTCATTTCCAACGAGGGAG
GAAACGGAAGGCTAGAGAAACACTGTACAAGTGCTGACCTCCTCAGCTCT
ACGCAAGAGGAAGGCTGGGTGGCCAGCACTGGTCCCAGATCTCTGAGGAG
TGCAGACTGGGGTCCCGGTGTCCACTGCTTCCTCCCGCTGGACCATCCTG
TCGGTTCCAATTCCCCTCCTTCCGTGCCCACTACCAAAGGCAAGCTCTTC
AAGCTTACTATCCGCATCATCCTAAACTGCGACAGGTTTGGCCCATCCTG
TTGTCAGCCAACAAGCCTTCCTGTGCTTTCGGCAGTCCTCTGTTTCAGCA
CCAGATCCAGTGAGGTTCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_p03.g1 MSMg01no102_p03.g1 CHROMAT_FILE:
MSMg01no102_p03.g1 PHD_FILE: MSMg01no102_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:41 2005
         (426 letters)



>mm_chr16_32707344_32708169
          Length = 826

 Score =  731 bits (378), Expect = 0.0
 Identities = 414/426 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcctaaacagccaaaggcttgttgcttcttctctctgtggggctctctgaatctctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 626 attcctaaacagccaaaggcttgttgcttcttctctctgtggggctctctgaatctctgc 567

                                                                       
Query: 61  tggagctgcccctcctgggaggattagcgcccctgagagtggtaaggactccctctttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tggagctgcccctcctgggaggattagcgcccctgagagtggtaaggactccctctttac 507

                                                                       
Query: 121 aacttctggctatctacagataagttaggtagtttaacaagcctagaggacagagtaagg 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aacgtctggctatctacagataagttaggtagtttaacaagcctagaggacagagtaagg 447

                                                                       
Query: 181 tacgtttcccagagcagaggactcttaacgtgagttactttccctaaagaacctcacact 240
           |||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 446 tacgcttcgcagagcagaggactcttaacgtgagctactttccctaaagaacctcacact 387

                                                                       
Query: 241 caggtgatctggcggagggagagctactgctcgcctctgcctgggagcccacaacacgtg 300
           ||||||| ||||| |||||||||||| |||| ||||||||||||||| ||||||||||||
Sbjct: 386 caggtgagctggcagagggagagctattgcttgcctctgcctgggagtccacaacacgtg 327

                                                                       
Query: 301 ttttcatttccaacgagggaggaaacggaaggctagagaaacactgtacaagtgctgacc 360
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 326 ttttcatttccaacgagggaggaaacggaaggctagagaaacactgcagaagtgctgacc 267

                                                                       
Query: 361 tcctcagctctacgcaagaggaaggctgggtggccagcactggtcccagatctctgagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcctcagctctacgcaagaggaaggctgggtggccagcactggtcccagatctctgagga 207

                 
Query: 421 gtgcag 426
           ||||||
Sbjct: 206 gtgcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)