BAC Information

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BAC

Clone NameMSMg01-102P20
Chromosome16 (Build37)
Map Location 43,875,707 - 43,966,509
singlet/doubletdoublet
Overlap geneQtrtd1, 2610015P09Rik
Upstream geneBC002163, LOC667484, Zbtb20, LOC100043314, Drd3
Downstream geneZdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102P20.T7 (MSMg01no102_p20.b1)MSMg01-102P20.TJ (MSMg01no102_p20.g1)
ACCAG317984AG317985
length802729
length of high quality
(start - end)
188 (139 - 326)246 (81 - 326)
definitionCHROMAT_FILE: MSMg01no102_p20.b1 PHD_FILE: MSMg01no102_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:45 2005CHROMAT_FILE: MSMg01no102_p20.g1 PHD_FILE: MSMg01no102_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,966,323 - 43,966,509)(43,875,707 - 43,875,952)
sequence
NNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNCCGCCCCGNNNTCCTATTT
ACTNNNNGATTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGA
CGAGCCGCGGAATTCCTTCCTTGGCAAAAAAGAGTTTAGGAGCTTACAAA
GTACTGTGTAGGTCACCCTCACTGCCTCGTCCGCAAGCCACTCTGACACT
GCTAAAATGAAGCCTTAAATGTGTTTTGGGGACAATGCTGTCTGCTCCCT
CAACCACATAGTTGCTAGGATATTGTAAATCTCTGCTCTCCCAATGGCAT
TTTCCTCTGATGAATGCACTGACTGATTGTTGACCACTGAACCGCCTGCC
TGAAAGGCAACTGCTGAAAGCTTGCTCTTTTTTTCTATACTCCTTGGAAC
TCTTAATAATTTTAGTATTTTTTACTCCCCCCCCCCCCCCTTGTTTTTGT
CAGAAAACACATTGCCACTACGACTCCAAGTAAAAAAAAAATATGCCTGT
GTGACTTCCTTAATTATTATACGACTTCACTTTTTATTATATAATCACAT
TTCGATAAAATTGATTAAACCGTCTAACCCCCCCCTTTTAACCTTCTAAG
TCCACTTTATCGTAATGTTTCCAACCCCTTTGTTCCCTCGATTTAACTTG
GAGCCTTAAAATTTTTCACTTGAATTTTCTCTCCCCGTACTGACCTTCTA
TTCGCAAACCACCGTCCGCAAAAAAATCCAAAACATCATATCACCACTTC
GTGTTATAACTTGTTGGAAGCGATTCCTGCGCTATGTGATCATTACACTT
TA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCCGAATTCTCCTGGGTCGCAGAGCTGGAGGCCGGTTAG
GCAGAAAGGAGCACGGATGAGGCTAGCTAAAGCAGCTCGAAGGTAAGCAC
CGCCACGAGAGACTGGGCTCAACAGGAAGCGGGAAGAGGCAGCCTCAAGG
CCTGTGTGAAGTGATGGAGTGAGGGAGGAACACACATGTGGACAGAAAAT
GTGCGTGGTCAGAAAGTCTTATTACATTCCTGGGCTATGGGGTCTGGTGA
CTGCTGTAAGCTGAGGTAACAGGTTGTTTATGAGTAGACTTGAGAGATAA
GAGCTTGATGGACATTCTACAGCCACCACTCCCTTATAGCCCAGTATGTA
TACAGTTCTAACTCTCAAGGTAAGTAAAAGGAAATTGACACCAATACATT
TTCAAAATTATTCACCAAATAATTAAAACTAAGGGAAGGTGGTGCTGGAG
ACATGGCTCAGCAGATAGTAATACTTATTTCTCTTCCCAGAGGCCCTGAG
TTCAATTCCCAGCAATCACGTGGTGGCTCACAACCATCATTAATGGGGTC
CGATGCCCTCTTCTGGTGTGTCCGAAAACAGTTGCAGTGTACTCACCTAC
ATAAAATAAAAATACAATCTTTTTTGACAACAGCTATTTCATTATATATA
ATATCGGTATACGCAAATACACCTGTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_p20.b1 MSMg01no102_p20.b1 CHROMAT_FILE:
MSMg01no102_p20.b1 PHD_FILE: MSMg01no102_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:45 2005
         (188 letters)



>mm_chr16_43966123_43966710
          Length = 588

 Score =  346 bits (179), Expect = e-100
 Identities = 185/187 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggagcttacaaagtactgtgtaggtcaccctcactgcctcgtccgcaagccactctgaca 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 387 ggagcttacaaagtactgtgtaggtcaccctcactgcctcgtcggcaagccactctgaca 328

                                                                       
Query: 61  ctgctaaaatgaagccttaaatgtgttttggggacaatgctgtctgctccctcaaccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctgctaaaatgaagccttaaatgtgttttggggacaatgctgtctgctccctcaaccaca 268

                                                                       
Query: 121 tagttgctaggatattgtaaatctctgctctcccaatggcattttcctctgatgaatgca 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 267 tagttgctaggatattgtaaatctctgctctcccagtggcattttcctctgatgaatgca 208

                  
Query: 181 ctgactg 187
           |||||||
Sbjct: 207 ctgactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no102_p20.g1 MSMg01no102_p20.g1 CHROMAT_FILE:
MSMg01no102_p20.g1 PHD_FILE: MSMg01no102_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:45 2005
         (246 letters)



>mm_chr16_43875507_43876152
          Length = 646

 Score =  422 bits (218), Expect = e-122
 Identities = 239/246 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagctggaggccggttaggcagaaaggagcacggatgaggctagctaaagcagctcga 60
           |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 cagagctgaaggccggttaggcagaaaggagcacggatgagggtagctaaagcagctcga 260

                                                                       
Query: 61  aggtaagcaccgccacgagagactgggctcaacaggaagcgggaagaggcagcctcaagg 120
           || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 agataagcaccgccacgagagactgggctcaacaggaagcgggaaaaggcagcctcaagg 320

                                                                       
Query: 121 cctgtgtgaagtgatggagtgagggaggaacacacatgtggacagaaaatgtgcgtggtc 180
           ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgtgtgaagagatggagtcagggaggaacacacatgtggacagaaaatgtgcgtggtc 380

                                                                       
Query: 181 agaaagtcttattacattcctgggctatggggtctggtgactgctgtaagctgaggtaac 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 agaaagtcttattacattcctgggctatggggtctggtgaccgctgtaagctgaggtaac 440

                 
Query: 241 aggttg 246
           ||||||
Sbjct: 441 aggttg 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)