BAC Information

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BAC

Clone NameMSMg01-103L18
Chromosome16 (Build37)
Map Location 85,371,672 - 85,372,013
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665664, LOC547311, LOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App
Downstream geneCyyr1, LOC100039994, LOC622000, Adamts1, Adamts5, LOC100040025, LOC100039780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103L18.T7 (MSMg01no103_l18.b1)MSMg01-103L18.TJ (MSMg01no103_l18.g1)
ACCAG318529AG318530
length737710
length of high quality
(start - end)
---342 (74 - 415)
definitionCHROMAT_FILE: MSMg01no103_l18.b1 PHD_FILE: MSMg01no103_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:45 2005CHROMAT_FILE: MSMg01no103_l18.g1 PHD_FILE: MSMg01no103_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCAAGGATCGGNCGGTCTAAGATTGCGAGGCGNTATCCGAGGACTGATTT
TCGAAGTAGGCGAAATTCATATGCATTTTCGAGACTGAAGCTGGGTCTCT
CATAGGCTGTCTTCTCAGAGGTATGGTACTTGGGGTGATGATCTGGGAAA
GTTCTGGTACCACAAAAGGCTGAAGCACAATCAATGGCATCTGTCTCATT
GCGATTCGTTAACCTTACCCCTCAGCATCCTATCTTGCTTTCTCTTTCAT
TTGTTCTGCTTCTGTCTCAATTTCCATACATACACCGGTACTAATTCTCA
AAAATATATACATTGATCCATTATAGGTTGCTACTTATTTTTTTTTTTTC
ACCTAACCCGTACACACCTACCTCAAATTAATATACAAACCCCCCCCCAC
TTAAGTATATCTTACTATGCATACAAATCACCTAACCTTTTCTTATACTC
TTTTCCCTAAATGCTAGGAATCCTTATTCTCTGTTTTTAAAAATTCCAAC
CCTATTTTTAACCTATCACCTATCAATCCATATACCCCTATACACTTTCA
CCTATTCTAACCATATACCGTCCTATATATACCAACATATACACATAGCA
ACTATTATATTTCTATTCCCACGTTTTTTTTATATCATATAATACACTTA
TTTTACGCAATTTAACATTACCAATATTTTCCCCCTTACATCACAACCAT
ATCACACACCTATAACCTACAACAATTATTATACCAA
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTTGAAATTGCTTCTGAACAGCACC
TTCACTAGAAAATAAATTTCACGGATGTCTCAGGAAGAAACTTGCTTTGT
ACAGTAGAGGAAGAGGACAGAGCTGGACAACGGGAAGGACTCTTGGTGGA
CACCTCCTTCACAGATATGGATTAGCAAGAGCAAGGCATACCAACGTTAC
CATGCAAAAACATGAAACTCATACAAAACATAGAACTTACGGGAAGGACA
GATGGCCGAGGCTTAAATACCCATCTTGAAGAATGAAGTGGGGAAGTTGT
CTTAATTAAAGGGGGCTGTTTTAGAGAGCGAGCCCCTTCCACATCTTAGG
GCTAGACTATGGGAAGCTCACAGGGAGCTTAATTCTGAGGCTATTTCTAC
AGCTCGGCATGCCAGAGCTCCACATTTTGAGCTATACTTTTCTGAGCCTT
ACTAGTATTTAAAATAAAATGTTTGACAGACAGAATATGCTATGTGTAAA
AAAGTTAGGTGTGCCCAGGTTGGGTTGAATCTCAGTATAACATTGCGGCG
GACGGCACCCGCTATGTCGAGAGGCACATTCTAAAATTACAAAAGATTGT
TCGCCAGGCCTTTTGAGCTTTCATTTAACAGACATCCCACTTGAGCTCCA
AATTCACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_l18.g1 MSMg01no103_l18.g1 CHROMAT_FILE:
MSMg01no103_l18.g1 PHD_FILE: MSMg01no103_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:45 2005
         (342 letters)



>mm_chr16_85371472_85372213
          Length = 742

 Score =  584 bits (302), Expect = e-171
 Identities = 332/342 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttgaaattgcttctgaacagcaccttcactagaaaataaatttcacggatgtctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttgaaattgcttctgaacagcaccttcactagaaaataaatttcacggatgtctcag 260

                                                                       
Query: 61  gaagaaacttgctttgtacagtagaggaagaggacagagctggacaacgggaaggactct 120
           ||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||
Sbjct: 261 gaagaaacttgctttgtacagtagaggaagaagacagagctggataacaggaaggactct 320

                                                                       
Query: 121 tggtggacacctccttcacagatatggattagcaagagcaaggcataccaacgttaccat 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcggacacctccttcacagatatggattagcaagagcaaggcataccaacgttaccat 380

                                                                       
Query: 181 gcaaaaacatgaaactcatacaaaacatagaacttacgggaaggacagatggccgaggct 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 gcaaaaacatgaaactcatacaaaacatagaacttaagggaaggacagatggccgaggct 440

                                                                       
Query: 241 taaatacccatcttgaagaatgaagtggggaagttgtcttaattaaagggggctgtttta 300
           ||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 taaatacccatcaggaagaatgaagtggggaagttgtcttaattaaagggggctatttta 500

                                                     
Query: 301 gagagcgagccccttccacatcttagggctagactatgggaa 342
           |||||  |||||||||||||||||||||||||||||||||||
Sbjct: 501 gagagaaagccccttccacatcttagggctagactatgggaa 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)