BAC Information

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BAC

Clone NameMSMg01-103L20
Chromosome16 (Build37)
Map Location 78,691,379 - 78,691,795
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605
Downstream gene4930570E03Rik, Chodl, Prss7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103L20.T7 (MSMg01no103_l20.b1)MSMg01-103L20.TJ (MSMg01no103_l20.g1)
ACCAG318533AG318534
length734718
length of high quality
(start - end)
254 (83 - 336)417 (75 - 491)
definitionCHROMAT_FILE: MSMg01no103_l20.b1 PHD_FILE: MSMg01no103_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:45 2005CHROMAT_FILE: MSMg01no103_l20.g1 PHD_FILE: MSMg01no103_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATTATACCNTCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCC
CAAATCCGCGGAATTCTTTGTTTAGTTTCCTACCCTATTTTTTAATAGGG
TTATTTGGTTCACTGGAGTCTACCTTATTGAGTTCTTTGTATATATTGGA
TATTATACCTCTAGCAGATGTAGGATTGGTAAAGATCTTTTCCTAATCTG
TTGCTTGCCTTTTTGTCTTCTTGACAGTGTCCTTTGCCTTACAGAAGCTT
TGCAATTTTATGAGGTCCCATTTGTTGATTCTTGATCTTACAGCACTAGT
CATTGGTGTTCTTTTCAGAAATTATTCCCCTGTGCCCATGTTTTCGAGAA
TCTTCCCCATTTTCGCCTTTATTAGATTCAGTGTATCTGGCTCTATGTGG
AGGTTCTTGATCCACTTGGACTTGAGCTTTGCGCTAGTCTAACCAAATTA
GTAAGCTCAATTAATTATCTCTGAAAGTATATCCTGCATAATTAACTGAC
GGTATGCTGTGTCAAACAGTTTACTTAAACGCAGTCACTTTATACTTAAG
ATTTGACATACCTCTATCCTAAACTGTGAATAACCTATAATATCCTTAAA
CGTTTCTTTAATTGTTTTGCCTGGAGGTATACGTTTTGAATATACCCTTT
TGTATACCTGATAATGTGACCTTTCTCTTCCCCTTTTGGCTTTCCCTAAA
CTTGAACTTCATCTTTTCAAATCTCGGACCGTAT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCTTTCGAATTCAAGACCTAGATGGGCATAGCAAGTTT
GCTACATGAAGCTTCCTATTCAATAACGATGTTACTTTAAAATGTGATAT
CTCCTTATAAGGATGCGGGGGAAGGGGTGCAGTTTGGGTAAAGGAAGTTT
TATTGGAGCCATGAATAGGTTATCTGTAGCTTTATGAAAATAATACCGTT
CAGCAATGTGGACACCTGATGTAGCTGTTTAAGTTGTTCCTTTATTGGGT
ATTATGCTAACATGATGAAATAAAAATCATTAATTCCCCAAATTTTTCTA
ACTGATGGATTGAGAGCATTAATGAACCCATTTAAGGGAGGTAGTCTGGG
TAATTTTCTGCCTGCCTTTTCTTTATTCTGATGATTCAATGATGACTTTC
TAGAGCTAAAGATCAGAAGATAAGGCATCTCATTCCATTGCATGCATTAG
AAGCATAGGCCACTCTATGATCACCCAGAAGCCGAGAAGTAACTAATGAT
GTGGTTGCATTCAAATTTATATAATGATAATTTTGATATAAGGCCCACAG
ACCATAAGAAGAAGGCCTATTCTAAAGTAAGAACATTATTCACTACGTTA
GCTATTGATATAAAATACTACCTTTACTAAGTTTACAGGTAACTAACATT
ATCAACGGTTTCGCAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_l20.g1 MSMg01no103_l20.g1 CHROMAT_FILE:
MSMg01no103_l20.g1 PHD_FILE: MSMg01no103_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:45 2005
         (417 letters)



>mm_chr16_78691179_78691995
          Length = 817

 Score =  737 bits (381), Expect = 0.0
 Identities = 409/419 (97%), Gaps = 4/419 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagacctagatgggcatagcaagtttgctacatgaagcttcctattcaataacgatgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagacctagatgggcatagcaagtttgctacatgaagcttcctattcaataacgatgtta 260

                                                                       
Query: 61  ctttaaaatgtgatatctccttataaggatgcgggggaaggggtgcagtttgggtaaagg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 ctttaaaatgtgatatctccttataaggatgcgggggaaggggtgcagtttggggaaagg 320

                                                                       
Query: 121 aagttttattggagccatgaataggttatctgtagctttatgaaaataataccgttcagc 180
           ||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||
Sbjct: 321 aagttttattggagccatgaaaaggttatctgtagctttatggaaataataccattcagc 380

                                                                       
Query: 181 aatgtggacacctgatgtagctgtttaagttgttcctttattg-gg-tattatgctaaca 238
           ||||||||||||||||||||||||||||||||||||||||  | || ||||||||||| |
Sbjct: 381 aatgtggacacctgatgtagctgtttaagttgttccttta--gaggatattatgctaata 438

                                                                       
Query: 239 tgatgaaataaaaatcattaattccccaaatttttctaactgatggattgagagcattaa 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 439 tgatgaaataaaaatcattaattccccaaatttttctaactgatggattgagagcataaa 498

                                                                       
Query: 299 tgaacccatttaagggaggtagtctgggtaattttctgcctgccttttctttattctgat 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgaacccatttaagggaggtagtctgggtaattttctgcctgccttttctttattctgat 558

                                                                      
Query: 359 gattcaatgatgactttctagagctaaagatcagaagataaggcatctcattccattgc 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gattcaatgatgactttctagagctaaagatcagaagataaggcatctcattccattgc 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)