BAC Information

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BAC

Clone NameMSMg01-105C14
Chromosome16 (Build37)
Map Location 84,562,373 - 84,562,613
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039572, EG621729, LOC640489, LOC665664, LOC547311
Downstream geneLOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App, Cyyr1, LOC100039994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105C14.T7 (MSMg01no105_c14.b1)MSMg01-105C14.TJ (MSMg01no105_c14.g1)
ACCAG319589AG319590
length694687
length of high quality
(start - end)
414 (49 - 462)241 (75 - 315)
definitionCHROMAT_FILE: MSMg01no105_c14.b1 PHD_FILE: MSMg01no105_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:42 2005CHROMAT_FILE: MSMg01no105_c14.g1 PHD_FILE: MSMg01no105_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCG
CGGAATTCTCACCTGACCAATACCGAATGGCAGAGAAGCATCTGAAAAAA
TGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAG
ATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGCGTGGATGTGGAGAAAGAAGAACACTCCTCCATTGTTGG
TGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCT
CAGAAAATTGGACATCGTACTACCGGAGGATCCAGCAATACCTCTCCTGG
GCATTTATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAG
ATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAA
TGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAATTTCCTAGCC
AAATGTATGGACCTGGAGGGCATCATCCTGAGTGATGGTACACATTCCCA
TATAAACTCCCCCCATATTGTACTCACTGATCAATGGATATTAGCCCCCA
AACCTAGGATACCCATGATATAAGATACCTTTTCCTATACCCCT
AATCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCTGTCTATGCCTCATGTCTACCAT
GAATTCCTAAAGAGCACACTACCGAGTAATGGGTATTAATGTGTGTAAAA
GAGGAATTGTTATAGACACTCCCATTTATTAAAATATGACAGGTTGGTTC
CTGAAAATATGTTGGTACAAATTAAGGGATTATTAGGTAAACCGATGCAG
GAAGTTAGGCAGAACAAATGGGTTTTTGAAAAGGAGAGAATAATTTAGTT
CTTCAGAGGTGTCAGATTCAGCTTGAATTTATTGAGGACATTGCTCATTT
TATGCAAGTGAGTCTAAAGACTCTCAGTCTAGCACTTCTAACCGAGGGCA
TCTCAAGAGAGGCACGTATTGTTCTTCAACACGATGAAAGCTGGTGACAA
TCACTTCTCAGAAGCTGGTATGAAGCCACATCTAGTATAGCTTACATACT
TTACGGAATAAGCAGTTATTTCCCCTCATCAACAGCTTGCTGCTGTGGTA
TTGTATCTGTGCAAACTTATGCCGTAGGAATCAACACAAACAGATTTTAT
CCATCATTTATGGTTTTCCTTTCGAAATCTCGCACTTGCCCAAAAGTCTT
TTTTATGTGTTCTTAAAGTTGTATCATGACTGAGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_c14.g1 MSMg01no105_c14.g1 CHROMAT_FILE:
MSMg01no105_c14.g1 PHD_FILE: MSMg01no105_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:42 2005
         (241 letters)



>mm_chr16_84562173_84562813
          Length = 641

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgtctatgcctcatgtctaccatgaattcctaaagagcacactaccgagtaatgggt 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 441 ttctgtctatgcctcatgtctaccatgaattcctaaagagcacactaaggagtaatgggt 382

                                                                       
Query: 61  attaatgtgtgtaaaagaggaattgttatagacactcccatttattaaaatatgacaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaatgtgtgtaaaagaggaattgttatagacactcccatttattaaaatatgacaggt 322

                                                                       
Query: 121 tggttcctgaaaatatgttggtacaaattaagggattattaggtaaaccgatgcaggaag 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggttcctgaaaatatgtcggtacaaattaagggattattaggtaaaccgatgcaggaag 262

                                                                       
Query: 181 ttaggcagaacaaatgggtttttgaaaaggagagaataatttagttcttcagaggtgtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaggcagaacaaatgggtttttgaaaaggagagaataatttagttcttcagaggtgtca 202

            
Query: 241 g 241
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)