BAC Information

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BAC

Clone NameMSMg01-105D06
Chromosome16 (Build37)
Map Location 27,344,348 - 27,344,691
singlet/doubletsinglet
Overlap geneOstn
Upstream geneCldn1, Cldn16, LOC100043057, Il1rap, Gm606
Downstream geneUts2d, Ccdc50, Fgf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105D06.T7 (MSMg01no105_d06.b1)MSMg01-105D06.TJ (MSMg01no105_d06.g1)
ACCAG319620AG319621
length1,651722
length of high quality
(start - end)
---346 (89 - 434)
definitionCHROMAT_FILE: MSMg01no105_d06.b1 PHD_FILE: MSMg01no105_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:45 2005CHROMAT_FILE: MSMg01no105_d06.g1 PHD_FILE: MSMg01no105_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNTTTTTTTTTTTTTNCCCNNNNNNTTNNNNCNTNCCTTNT
TNNNTNNNTTTTCTTCTCNACATAANTACTATTNCNNCTNNNGTTTATAT
TTNNNTTNNTTCTTTTCTTTTTCTTCCCCTTTTCTACACATTATACTCTC
TCTNTCNGCCTGTTTANATTGCTTTCTANNATAATANTCTCATTNTCTTC
TATTTTCCTCTCTATATAATGTTATATTCATCTATTCAGTTCTGTCCTAT
CACACGCTCGCGCGTACCGCAGCACGGCGCCGANAGTAGTGGTGCAGAGA
CATAGACAGCATNGNAACACGCGTGATGATCGGGNACGATGAATGGTATG
TNAGTCACCTCTGATATGATCATATCCGCCTTACTACGATGCCNCTACAC
TCAGAACTTAGATACATACTATGCTACAATATAGATCTCATGCACATAGT
GGAGATTACCCCGCCATCACTCCAGCGAGGACGAGGACATACGACGTGAG
AGAACGAGAAAGTGATAGAGNAGGCGAACTGACGCGCCACCTGGCCCGCG
AGTCTCGGTGTAGTGCGCGGTGCGCTGCCGCGACTCGCGACTCGTGTAGC
GTGATGCGGACGATCGAGTCTGCGCTGTGTAACTTAGATCGCACGAGAGN
TGCGACACACTCNTCTGCCACTCATATATCACATGACTAAACGATACANC
TTATAATATAACAAANCAGTAGCACCAACTCATAAGCANTAACNAGCNAC
CTATCATCGAGATCTACTCGACGAGAGATGAGCCGCTATTATACGACTAG
CTATCGAGGTGATACACAATACGACATATGTAACACGTGCAGTGTATAGA
GGTGGCATGGTTTGACGANCTCTACTGCCNGCACACATCATTATATACAG
TGATCATAAGCGATATGCGANCTCACACTAGGTAGTTATAATACGAGANG
TGACTGTCGGATAGTGGAGATTTGATAGCGGATACACATGCATAGCAGAC
ACTACTCAGTACTCGCGCCTCACTGACACGCACTCTGTGATCTAACTCGC
ATATAGCCGCATGTATGTCTGTGTGACTAGCCAGCATCTAGTGATATCTG
ATAGCGANGCCCCCGCTGCGAAGATACGACACATCGATGTACAGACGCAA
TATCTATACACTGAGATACACACNACGACTAGCCGTGTGTGCTAGCTAGC
GCGCCACTCATGACGTCGGCATGTGTATAGCCGTGCTTATCCTCATACTT
GTGCACGCGACCGTCGCGCGATCGNATCGTATAGATCGAAACAACACATA
TGTGTTAGAGCACATCATCGCCGCGGGCTGCAATGCAGGCGTCGTATGTG
CGTACTGNATGATTGAAGTGNCNCACCGCGCTCGTACTCCAGTGACTTAC
TACTATGCACGCATCATGATATCTACGCCACTCGCATGTGAACCATGTAT
GACATAGAGCGCCGCTGCAGCAGCACATTGAACTATCAATCATGACACTC
ATGCGACAGCAACGACGCTCGATATGATCACGACGGGCTCGACTGCTACT
TATCACACTACGCGCGTCGTGCGACGACACGCAGTAGTAAGATACTACGC
CGCGACCGCNACATGAAGTAGCTAGCGTCCACTGCTCGNCGCGNCTCGAT
G
CTTGCTAGTNCNCTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAGCCATTTT
GACTTTCATGGATTTTTTTAAATATAATTGTTTCTGTGAGTTTTATATGT
GCTGATTTGTTTATATGCTGAGCAGATTTATATGCACAAACCTATAATTA
ATTACTTCTAAATATCTGTAAGCCTTTGTGGTGGATCCCACATTTGATAA
GATGGATCAAAGTGATTAAAATGCTAGAACAAAGCCACAGGCTACCTGTC
TCTGCCCACTGAGGGTGGTCCTCTGCTCTGAAGTAGCTGAAATAGTCTGG
AAATAATTCAACTGGACTAGGAAGAACACCAGCTAAATGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCCCCTCTACTCTACTTT
CTTACAGTTGTTCTTTATACTTCTTTTCCAACCCCATACTTCCCCTTATT
CCATTCATCAACTTCCACACACTTCCCCTTCTCCTATCCACACCTATATC
ATTCCCTCCTATTCCTTTCCCCCCCCCCCCTATCCCTATCCCCTTCCTTC
TCCTTCTCCTCTTTCCCCCTCTCACAATTCCTTATCCTCCCTCCTATCAA
TAACCTTAACTCCCCCCACCCCTTATCCCCATTCATCTCCCCCCCTCCTT
CTACTACTTCCCCCCCTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_d06.g1 MSMg01no105_d06.g1 CHROMAT_FILE:
MSMg01no105_d06.g1 PHD_FILE: MSMg01no105_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:45 2005
         (346 letters)



>mm_chr16_27344148_27344892
          Length = 745

 Score =  580 bits (300), Expect = e-170
 Identities = 333/346 (96%), Gaps = 7/346 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgagccattttgactttcatggatttttttaaatataattg-tttctgtgagttttata 59
           |||||||||||||||||||||||| ||||||||||||||||| ||| |||| ||||||||
Sbjct: 201 ctgagccattttgactttcatgga-ttttttaaatataattgattt-tgtgggttttata 258

                                                                       
Query: 60  tgtgctgatttgtttatatgctgagcagatttatatgcacaaacctataattaattactt 119
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 259 tgtgctgatttgtttatatgctgagcagatttatatgcacaagcctataattaattactt 318

                                                                       
Query: 120 ctaaatatctgtaagcctttgtggtggatcccacatttgataagatggatcaaagtgatt 179
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 319 ctaaatatctgtaagcctttgtggtggatcccacacttgataagatggatcaaagtgatt 378

                                                                       
Query: 180 aaaatgctagaacaaagccacaggctacctgtctctgcccactgagggtggtcctctgct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaaatgctagaacaaagccacaggctacctgtctctgcccactgagggtggtcctctgct 438

                                                                       
Query: 240 ctgaagtagctgaaatagtctggaaataattcaactggactaggaagaacaccagctaaa 299
           ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctgaagtagctcaaatactctggaaataattcaactggactaggaagaacaccagctaaa 498

                                                         
Query: 300 tgtgtgtgt----gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 341
           | |||||||    |||||||||||||||||||||||||||||||||
Sbjct: 499 tatgtgtgtaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 745
Length adjustment: 9
Effective length of query: 337
Effective length of database: 736
Effective search space:   248032
Effective search space used:   248032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)