BAC Information

Click to search

BAC

Clone NameMSMg01-105D24
Chromosome16 (Build37)
Map Location 90,548,972 - 90,549,435
singlet/doubletsinglet
Overlap genenone
Upstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
Downstream gene2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105D24.T7 (MSMg01no105_d24.b1)MSMg01-105D24.TJ (MSMg01no105_d24.g1)
ACCAG319655AG319656
length705728
length of high quality
(start - end)
466 (43 - 508)179 (156 - 334)
definitionCHROMAT_FILE: MSMg01no105_d24.b1 PHD_FILE: MSMg01no105_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:49 2005CHROMAT_FILE: MSMg01no105_d24.g1 PHD_FILE: MSMg01no105_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATT
CACCACAGTTCCCATCATGTCCAATCAGGGGCAAGCATGCATCCTGACAT
CTTTCCTGCCTGCCTCCCCCCACATGTGAGCAAGCACATCCGGTGTAGTT
GGGTCGAGCAAACTTGTTTAGGGAAATGAAAACATAGCTTGTTATGGCCT
ATAAACGACAGCCTCTAGCACTTCAGAAAGTATCTGATCTTGGGCAAGGG
GCTTATAGGTCAGAACATTTCTGTTTGGTGGATCTCTTAGGCACAGTAAT
TAAAACTTAAAACATATCTTCGGCTCTGGCAATGGCACTGACATCTGTAA
CCAGTGACTTTAAGCAAAGGATACTATCTTTGATGATATGAGTAGTAGCC
CTGAGCTAGTCTTCTGAAGGCCTTATGAGCAAATAGGTTTCTGAGGCAAG
AAGCAGTTCTGCCTCAAAATTCTTGTATCACATTTTTGACTGAATTCCCA
GCTTCAGATCTATAGATTTTGGACTTGGCATGTCCTTAGTGTTATTCAAT
GTTAGATACTCTCATATGATTTATCTACTTAGATAGCTGCTAATACCATG
ATTGCTAGATACAGACATGGAAAGTATATACCTTATCATTTATCTCTCAC
ATATCAACTATCATCCATCTTCCTATCATTCATCTGTCTGTCCGTTTGTC
TATCN
NTTGCATTTTNCGTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTCAGAAATTCCACCCAAGGACGGC
TACAGGCAGAGTGTAGGCAGCCCAGGACAGAGGCAACCCGTGCTGTAGAT
GGCTGAGCTGGAGGAGTGCAGCTGCCCAAGACCACCGGAGCTCAGATGAT
TTCGCCACAGACCTCAGATGCTTGACCCGGGGCTGCGAGCTCTGATGTTT
GCCTTGCTCAGTTTGGTCTTGCTATGGCCTGATCATTCCATGCTGTGCCC
ACATGGAATGAGAATGCTTGCCCTGTGCCTTTCCTCTCTTGTGAATACAT
CGGTCTCCCAGTGTCTCATTTTGAATGGTTTGCCCCGAGCCTCCTCAGAT
GAGCCTCTGGCCTTTTCCATCATGTTGAGACTGTTATCCACTGTGGAGAC
TCCTCACGTTGGGTTGAACGCTATCTCGCATTGCTATGATCATGCCCCTT
TGATTCTATTCTCTGACGCTGCGTTCTCGAATGCGCCTCATGTCCTTGCA
CTCTTGACCTCTGCGCGGCCCCGGTCTCCTATACCTGTCCCCTCTCCTTC
TTCCTTGCCCTCCTTCTCGCTCACGTCTAGCTGAGATTCCCCCCTCCCCT
CCTACTTTCCTAACCCCCCCCCTCTTCCCTCCCTGATCCTTCTCCCCGAC
CCCTTCTCCATCCTACCCCTCCTAGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_d24.b1 MSMg01no105_d24.b1 CHROMAT_FILE:
MSMg01no105_d24.b1 PHD_FILE: MSMg01no105_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:49 2005
         (466 letters)



>mm_chr16_90548769_90549635
          Length = 867

 Score =  851 bits (440), Expect = 0.0
 Identities = 458/464 (98%), Gaps = 1/464 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcaccacagttcccatcatgtccaatcaggggcaagcatgcatcctgacatctttc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcaccacagttcccatcatgtccaatcaggggcaagcatgcatcctgacatctttc 263

                                                                       
Query: 64  ctgcctgcctccc-cccacatgtgagcaagcacatccggtgtagttgggtcgagcaaact 122
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgcctgcctcccacccacatgtgagcaagcacatccggtgtagttgggtcgagcaaact 323

                                                                       
Query: 123 tgtttagggaaatgaaaacatagcttgttatggcctataaacgacagcctctagcacttc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtttagggaaatgaaaacatagcttgttatggcctataaacgacagcctctagcacttc 383

                                                                       
Query: 183 agaaagtatctgatcttgggcaaggggcttataggtcagaacatttctgtttggtggatc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 384 agaaagtatctgatcttgggcaaggggcttataggtcagaacatttctgttcggtggatc 443

                                                                       
Query: 243 tcttaggcacagtaattaaaacttaaaacatatcttcggctctggcaatggcactgacat 302
           |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 444 tcttaggcacagtaattaaaacttaaaacataactttggctctggcaatggcactgacat 503

                                                                       
Query: 303 ctgtaaccagtgactttaagcaaaggatactatctttgatgatatgagtagtagccctga 362
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgtaaccagtgactttaagcaagggatactatctttgatgatatgagtagtagccctga 563

                                                                       
Query: 363 gctagtcttctgaaggccttatgagcaaataggtttctgaggcaagaagcagttctgcct 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 564 gctagtcttctgaaggccttatgagcaaataggtttctgaggcaagaagcagtcctgcct 623

                                                       
Query: 423 caaaattcttgtatcacatttttgactgaattcccagcttcaga 466
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caaaattcttgtatcacatttttgactgaattcccagcttcaga 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 867
Length adjustment: 10
Effective length of query: 456
Effective length of database: 857
Effective search space:   390792
Effective search space used:   390792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)