BAC Information

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BAC

Clone NameMSMg01-106A18
Chromosome16 (Build37)
Map Location 74,948,190 - 74,948,623
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo2
Downstream geneLOC665042, D930038D03Rik, Rbm11, Stch, LOC546667, Samsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106A18.T7 (MSMg01no106_a18.b1)MSMg01-106A18.TJ (MSMg01no106_a18.g1)
ACCAG320236AG320237
length1,2631,227
length of high quality
(start - end)		474 (88 - 561)702 (82 - 783)
definitionCHROMAT_FILE: MSMg01no106_a18.b1 PHD_FILE: MSMg01no106_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:55 2005CHROMAT_FILE: MSMg01no106_a18.g1 PHD_FILE: MSMg01no106_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTATTTATTTTTNTCCAATGGGCGCTNXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTAGTCTTCTTGTATATTCATGGAGTCAAACTGAAAA
ATCCTATTCCTCAGACTTAATTCCTTACATGCATAATGAAGGACACCACT
GTCAGCAGTCAATGTAAAGTAGCATTGGAGTAAAGTGCATCACGGAGGGA
TGCAGCAGAAAGGGAAGTAAATCCAAACATTTCTTCTTTAATGAACTTAG
GAGTTCATGTGGACAGTTGCACGTTAGAATCAGGTCATTCTCCTGCTTCC
TTTACTTACTGACCTTTTTAATGAAAGGAATGGAAAGGAAAAGCAGTCAA
TAAAAGCAAATACATCTTAAATCTCCTTATAGGATTATACTAATGCATAA
TATTTGCTGGGATTACTGTAGAGAAAAGATAACAAACTCTGCCTAACTTC
TAAATTTTGGAATGGTTAAATAAATCGATTATATGTGTGTATGTATATAT
ATATATATATATATATATATATATATATATATATATATATATATATATAT
ACATATACACATATATATAAATTTATCAACTGATTAATAATTCGTGAGTT
TTTAAAATTATGATCACCATCTAAATGACTAGCATAGTTTCATTATTTCT
TTGCTTTATAAATAGCTTAAAAATTAACCAGCTATGCATGGTTTTATTGT
GATATACAACTCTAATAACAAATGGAAAATACTCAATAGCGACAGTTTAA
TTGAACATTCTTTTTTCTCTACGGGCTAGTGTGTGTGTGCGCGAATGATG
GTAAGCCCTTGAGTATATTGGTCTTTTTCTGTACCAGACCATTTCCATTG
TCACTAATAAAAAATGACAAGCTAGGGAAACTTTAGTTTCCAATATGTTT
CTATATGTTGATGTCTCTGTAAATAAGAGCGTTCCTTAGGGAGAGATATT
GTGCGAGTGTTACTAACATTATTAGTGTCTTTCAGACCCCGTTAAAAATT
TTGGTATAAAAGCTTTTCTTCCATATTAAAAATTCTATCCCAAATATTTT
TTCCCGGTATTTTATTTANGGCCCTCCATTGTTATCCCCGTTTTGNTTAA
GTCTTTTTTTCTCCCTTTATATTTCTAATTTTCTTAACACTACTATGTAA
TTGTGCTAATATCTATCTTTTACCCGGGCATTTATTTAAATATAAAAAAC
TTTTTCTTCGTCGTCTCTTTTGTATTTATATTTCTACTTTTCACATTCCT
CTTTCCTGAGATG

TTTCCTTTTTTTTTTTNNTAGCATGGATGCXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTTCATATTTTGTAT
AGTAGCCCTTTACTGATTGTGTACCTGTTAAAAGTCTTTTTTTATTTGTT
TGTTTTGTTTTGTTTTGTTTTTTCCCTGTAGCCTTACTCTTTCTATGATG
ATGGTGTCCTTTGATGTTTATAATAATTTTTATTAGACTATTTATTGTCT
CCTTGCAGCTGGTCCTTGTCCTCATTAATATATGTGCTCATGGGGCTACC
AAACCCCTGTCCCTTGTCTCTGTTTTCTTTGTCCTGGTCAATGGGGCAGG
GAGGGCGAGAAGATTCTGTGTACCAGGTTTTACTCTGAGGTCTTTGATCC
ATTTGGAGTTGAGGTTTATTCAGTGGTAAGTAAGGACATATTTGCATTCT
CTAGATACAGCCATCCAGTTTGACTAGCATCACCTGTTGAAGTGTATGTC
TTTTTTTCCAGTGTGTATGTCTGTTTTTGTTTTAGAAAATCAGGACTCTA
TAGGTGTGTGGACTAACTCTGCTTCTTCAAATAGATTCTGTTGATCAATA
CTGTATTTATCTGGCCAGTAGTATGATGTTTTATTTGTTTATAACTATAG
CTCTATATTACAATTTGAGTTCAGGAACAGAATTACCTCAGTCATTTATT
ATATTTTCAGAATTGTTCTAGGTATTCCGGGATTTGGGGTTTCCATATGA
AAACTGAAAAGTGTCCTTTGAACTTCTGTTAAGAGTTGTGTTGGAATTTT
GATGGGGATTGCTTTTGGTAGAGTGGCCATTCTTACTTATTAATCTTATG
GAACCGTGTACACAATATAACTTTCCGCCTTATGGTCTCTTTCATATTTT
TTCTTCAATGCTTTCAGATTTTATCAGAAAAGTCTTTTACTTTCCTTGGT
AATAAAGACTACAAAATTTTTTGTGGTATTGTGAAAGGTCTAGTTTCCTT
GACTCTCTCTCAATCCATTTTGCCTTTTATAATTAAAAGGGCTACTAACT
TTTAAAGGTTAATTTTGAAATTCCCCTGCTTTTTCTTAAAAGGTTTTTTC
AATTTGTTTCCTTTCCCTTGGAGAAACTTGTGAGGGGCCCCTTTTGTTAT
CCCATTTTATATCTCAACCCCAAATAAAAAATATTTGTGGCACCTCCCTA
TACTCTAATTTTTATCCCCCCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_a18.b1 MSMg01no106_a18.b1 CHROMAT_FILE:
MSMg01no106_a18.b1 PHD_FILE: MSMg01no106_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:55 2005
         (474 letters)



>mm_chr16_74947990_74948863
          Length = 874

 Score =  770 bits (398), Expect = 0.0
 Identities = 425/434 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcaaactgaaaaatcctattcctcagacttaattccttacatgcataatgaaggacacc 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 gtcaaactgaaaaatcctattcctcagatttaattccttacatgcataatgaaggacacc 260

                                                                       
Query: 61  actgtcagcagtcaatgtaaagtagcattggagtaaagtgcatcacggagggatgcagca 120
           |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 actgtcagcaatcaatgtaaagtagcattggagtaatgtgcatcacggagggatgcagca 320

                                                                       
Query: 121 gaaagggaagtaaatccaaacatttcttctttaatgaacttaggagttcatgtggacagt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 gaaagggaagtaaatccaaacatttcttctttaatgaacttaggagttcatgtggacact 380

                                                                       
Query: 181 tgcacgttagaatcaggtcattctcctgcttcctttacttactgacctttttaatgaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 tgcacgttagaatcaggtcattctcctgcttcctttacttactgaccttttcaatgaaag 440

                                                                       
Query: 241 gaatggaaaggaaaagcagtcaataaaagcaaatacatcttaaatctccttataggatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 gaatggaaaggaaaagcagtcaataaaagcaaatacatcttaaatctacttataggatta 500

                                                                       
Query: 301 tactaatgcataatatttgctgggattactgtagagaaaagataacaaactctgcctaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactaatgcataatatttgctgggattactgtagagaaaagataacaaactctgcctaac 560

                                                                       
Query: 361 ttctaaattttggaatggttaaataaatcgattatatgtgtgtatgtatatatatatata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 ttctaaattttggaatggttaaataaatcgattatatgtgtgtatgtatatatatatgta 620

                         
Query: 421 tatatatatatata 434
            || ||||||||||
Sbjct: 621 catgtatatatata 634


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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