BAC Information

Click to search

BAC

Clone NameMSMg01-106B15
Chromosome16 (Build37)
Map Location 11,119,757 - 11,120,426
singlet/doubletsinglet
Overlap geneTxndc11
Upstream gene4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf, LOC100043147, LOC100042597, Snn
Downstream geneZc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17, 4933437K13Rik, LOC100043171, C530044N13Rik, 2700045P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106B15.T7 (MSMg01no106_b15.b1)MSMg01-106B15.TJ (MSMg01no106_b15.g1)
ACCAG320278AG320279
length1,2471,276
length of high quality
(start - end)
678 (125 - 802)336 (130 - 465)
definitionCHROMAT_FILE: MSMg01no106_b15.b1 PHD_FILE: MSMg01no106_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:03 2005CHROMAT_FILE: MSMg01no106_b15.g1 PHD_FILE: MSMg01no106_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCGCTTCTTTNAAACATTGGGCGCATAGACTCCTATGGGAGAGGATCC
GCGGAATTCCCATAGTAGCTGCGGCCCTTTTGGTTTTATTTTTAAAAAAG
CCCCCTTGGGGCCATCCCTAGAGCTACTATTAGGATGTGTGGCCTTGGAG
TAGTTGTGGCTTTTTTGGAGGAGGTATTCTCTTCCTGCTGCCTGTGGATC
CAAATGTAGAATTCTCAGTTCCTTCTCTAGCACCTTGCCTGCCTGTACGC
TGCCATACTTCTGCCCAGACAATAATGAACTAAATTTCTGAACCTGTAAA
CCAGCCCCAATTAAATGCTTCCTGTTTATAAGAGTTGATGTGGTCATGGT
GTCTCTTTACAAACCTTAAGACAGTAGCTCAGACTAGCTTCAGACTCACA
GCAATCCTCCTGCTTCAGCCTTCAGAGTTCTCAGTTTAAAGGCATGAAGC
AAAACACCTGGCTTGGACTGTTGATTCTAAAATCTATAGAATCTGGGAAC
ATAAACAGCTAATGTGTATTCTTGTGCCTCTCAAAATGACCTTTATCTCA
ATTCAAGGGAATGCTCATTTTAATGTCACATCAACTTGAATCCACCTCTG
GCAGTGTGCAAAATTTTAACCACCCCACTGTTCAAAGCCAAGGAGTAACA
CAGGGACCTTAGCAGGGTAAATGCATCACCTGCTTCAGTACACTGCTTTC
TCCTGACCTCTATAAAGTAGGAACTAGGCCTGAGAGGGTCACTGGGACTG
TACCTTATATTTAAGAATCCCCACTTGAGCCTTTAAAGCAGAGGAAGAAC
CTACTGAATAAGAAGCAGAGTGGGGAGATTTGAAACCAATCTAAATTGTT
ACCAAGAGAAGCTAGCTTGTTCCTTTGATTCCACAGGCACTTCATATAAG
TGTAAAAAGTAGTCTTGCCTAATAAATCAGTTGTTTAGGAAAACACTTAC
ATGTACAACAGTTTATGCCCAAAGTGTTGGAACTGAGTAGAAAAAAGGTT
GGAAAGTCCGGTCTGTCCCCTAACGTTTGGCCTATGGATTAGGGGAAACC
CCTCCTATGGGGGCTCCCCTAAGGTCTTCTTTAAAAGAAAAAGGTAACCC
CCGTAAAAAAAACTCTCCTCCTAATCACTTTTTTTCCCCTTTGGCTTTTC
TGGGACTTTTAAACCAAATCCCCTGTTTGGTGGCTCTAATTTGCCTTTCT
TTTTTCATAGGGTTAAGGTTGGAAAATAAATTCTCTCAGCGGTTCCG
NCCCGTTTTCTTTTTTCTGCATGGAGCTGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTTAGATAACCTCCCAGGG
GATGTGGTGGTTTGAATATGCCTGTACCAGGGAGTTGCACTATTAGGAGA
TGTGGCCTTGTTGGAGGAAGTTTATCATGGTGGGAGTGGGCAACAAGACC
CTCCTCCTAACCACACGAGGACCAGTCTTCTCCTAGTGGACTTCAGGTGA
TGTAGAACTCTCAGCTCTTTCTGCACCATGTCTGCCTGGACACTGCCATG
CTCCTGCCTTGATGGTATTAGACTGAACTTCTGAACCTGTAAGCCAGCCC
CAATTAAATGTTGTCTTTATAAGACTTGCCATGGGGCTGAAGAGATGGCT
CAGTGGTTAAGATTACCAACTGCTCTTCCAGAGGTCCTGAGTTCAAATCC
CAGTAACCACATGGTGTCTCACAACCATCTGTAATGGGATCCGATGCCCT
CATCTGGTGTGTGTCTGAAGACAGCTACAGTGTACTCATATACATAAAAT
AAATAAAATCTTAAAAAAAAAGACTTGTCTTGGTCATGGTGTCTGTTCAC
AGCAGTAAAACCCTCACTAAGACTTAAGACTGGGGGTAAATCCCCTATAG
ATGGGATACAGGGTATGTGACGCAGAGGAAAAAGGTCTTCTCCTCACTTC
CCTGACCTGTAATGAGAGTTCTAATAAATTTCTTTTCATGTCCTATTTAT
TCTTCTTACTTGCCCCGAATGCTGAGGTTTATTTGCTCAATGAAGTTCTC
CATCCATGTTTAAAGATTTAACTATTACCTGAAAGGTTTTGGCTATGATA
GATAGGCCTATTTTGAACTCCCTTTGTTAGGGGAAGGTCATATTTTGGAA
TACGTTTTTGGAGGATGCTTTTAACCTACTTTTTTAGCTATTTTCCTTTC
CGGGGGAAGATACTTTTCTACTTTCTCCCTAATAGATTATTTTTTTTAAC
CTATCTTGGTCTTTTTTTCCCCCCCTGGGCAGGCCTATTTTTAATGAAGC
TCGTTTTTTCCCAAAATTTGTTGGGGGTATTGTTTCTCTCCTCTCTGTCT
CCTTTTTTGGTTTGGAGGTGGCCCCTGTTTTTTCAATTTAACGGTGGGAA
ACATACNCTTTTTCTCTTTCTTTGTGTGATGGTGGTGTCCCAGTTCTTTT
AATCTCCTCCTCTTCTTGTTCTTAAATATTCTTCGTTATCTCTTCTTTGT
TCTTTATAACCTCCCTGTTCTTGTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_b15.b1 MSMg01no106_b15.b1 CHROMAT_FILE:
MSMg01no106_b15.b1 PHD_FILE: MSMg01no106_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:03 2005
         (678 letters)



>mm_chr16_11119550_11120626
          Length = 1077

 Score = 1226 bits (634), Expect = 0.0
 Identities = 664/678 (97%), Gaps = 8/678 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactattaggatgtgtggccttggagtagttgtggcttttttggaggaggtattctcttc 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tactattaggatgtgtgaccttggagtagttgtggcttttttggaggaggtattctcttc 267

                                                                       
Query: 61  ctgctgcctgtggatccaaatgtagaattctcagttccttctctagcaccttgcctgcct 120
           ||||| |||||||||||||||       ||||||||||||||||||||||||||||||||
Sbjct: 268 ctgctacctgtggatccaaat-------tctcagttccttctctagcaccttgcctgcct 320

                                                                       
Query: 121 gtacgctgccatacttctgcccagacaataatgaactaaatttctgaacctgtaaaccag 180
           ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 gtacgctaccatacttctgcccagacaataatgaactaaatctctgaacctgtaaaccag 380

                                                                       
Query: 181 ccccaattaaatgcttcctgtttataagagttgatgtggtcatggtgtctctttacaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccccaattaaatgcttcctgtttataagagttgatgtggtcatggtgtctctttacaaac 440

                                                                       
Query: 241 cttaagacagtagctcagactagcttcagactcacagcaatcctcctgcttcagccttca 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 cttaagacagtagctcagactagctttagactcacagcaatcctcctgcttcagccttca 500

                                                                       
Query: 301 gagttctcagtttaaaggcatgaagcaaaacacctggcttggactgttgattctaaaatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagttctcagtttaaaggcatgaagcaaaacacctggcttggactgttgattctaaaatc 560

                                                                       
Query: 361 tatagaatctgggaacataaacagctaatgtgtattcttgtgcctctcaaaatgaccttt 420
           ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 tatagaatctgggaacacaaacagctaatgtgtattcttg-gcctctcaaaatgaccttt 619

                                                                       
Query: 421 atctcaattcaagggaatgctcattttaatgtcacatcaacttgaatccacctctggcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atctcaattcaagggaatgctcattttaatgtcacatcaacttgaatccacctctggcag 679

                                                                       
Query: 481 tgtgcaaaattttaaccaccccactgttcaaagccaaggagtaacacagggaccttagca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgtgcaaaattttaaccaccccactgttcaaagccaaggagtaacacagggaccttagca 739

                                                                       
Query: 541 gggtaaatgcatcacctgcttcagtacactgctttctcctgacctctataaagtaggaac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gggtaaatgcatcacctgcttcagtacactgctttctcctgacctctataaagtaggaac 799

                                                                       
Query: 601 taggcctgagagggtcactgggactgtaccttatatttaagaatccccacttgagccttt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 taggcctgagagggtcactgggactgtaccttatatttaagaatccccacttgagccttt 859

                             
Query: 661 aaagcagaggaagaacct 678
           ||||||||||||||||||
Sbjct: 860 aaagcagaggaagaacct 877


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1077
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1067
Effective search space:   712756
Effective search space used:   712756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)