BAC Information

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BAC

Clone NameMSMg01-106G21
Chromosome16 (Build37)
Map Location 34,442,920 - 34,641,794
singlet/doubletdoublet
Overlap geneKalrn
Upstream geneZfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, LOC100043670
Downstream geneRopn1, Ccdc14, Mylk, Ptplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106G21.T7 (MSMg01no106_g21.b1)MSMg01-106G21.TJ (MSMg01no106_g21.g1)
ACCAG320519AG320520
length7111,362
length of high quality
(start - end)
270 (80 - 349)363 (110 - 472)
definitionCHROMAT_FILE: MSMg01no106_g21.b1 PHD_FILE: MSMg01no106_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:50 2005CHROMAT_FILE: MSMg01no106_g21.g1 PHD_FILE: MSMg01no106_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,442,920 - 34,443,187)(34,641,432 - 34,641,794)
sequence
AGGACACCTTGGCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTCAA
AGAGGATCCGCGGAATTCAATGAACTCCCACATCACTTCCTGTAGAGTGC
TCCAACGCACAGGAAACAGAGAGTCACGTCATAAACAGGGCTAAGAACAA
TCAATCACAAGCTACCATTTTCAGTGAGCCTACTATGCTCCAGGAACTCA
GCTAAACTGAACAAAAGTATCTTATCTCAGCAAGCTTGCAGTACTGACTG
GTTTTGTGCGCCAACTTGGCACAAGCTACTGTTATCTCAGAGAAAGGAGC
CTTGGTTGAGGAAATGCCTCCATGTGTAGGGTATTCTTCTCAATTAGAGA
CCAATGGGGGAGGGCCCAGCCCATTGTGGCTGGTGCCATCCCTGGGATGG
TAGGACTGGGTTCTAGGAGTCATCATCAACCAAGCCTGTAAGTAGCACCC
CTCCATAGCCTCTATATCAACTCTGGCCTCCAGGTCTCCTTCTCCCGCTT
GACTTCATGTTCCGACTCCTATCCATGATTCCTTGTGATCCGCTCTGCTA
ACGTTACATAATCCCGTTCCTTCTTATTTCGTCTCTTGCACCCGCCGTTT
TCCCGTAACAGCTAAACCTAACCACCTCTGCCCATCGTAGTTCCGATGAC
TTCCGACTTTATAGTATACCTTCCCCAAAAAACCTTACTCACCGCCCCCC
ATCACCAACTT
TCTAGGTAGCGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCTTAAAATGGACGGTTTCTGGATCGTCTTCCTCCCT
GGACCCCAGTCCCTTCTTGCTCTAAAACTCCTTGCAGCGGTATCTTACTG
CTGGCCATGGAGAAATGTTCCACTTGCCCCCATGTCCAAAGCCTGGTGCC
GTGCTGTGCCCTAGCACGTGTTTAATAAATGCCCCTTTGTCCCAGGATTC
ACTTCAGTTGGTTTTTATTTAAATATTTAATGAAGTGAAATTGGGTATAA
GTGCCTCCTTAGGGAATCTTGGGAAAGTACAGGGATGTAATCAAATGGTT
CGCAAATTGTACTTACTTATTTATAACCCTGATTTGAAAAGAAGGATCGG
AGTTTTGAAAGGGGGCGTTCACATTTTACAAAAAGTGTCTCCTATGGAAC
GAGGTATGGAATCGTTCCTAGGAGAAGCGGGATGTGCCAAGCCACTGTCT
CGAGTTGCTCCTTCCGATCCGTCTGATGCGGTAATGGTTCTTTGTAGCGT
TGATTAAAACAGCAATTCCTTCCGACGACTGCTAACTCTGCTGTGAAAGT
ATGAGTTCAACCCATGACTCTAGTTATTTTTACGGTGGGGGGTGGATCCT
CCTAGGTTTTCGCTGTGCTTGATTGTTATTGTGATGTTAGGCCAGTATAT
TTTCTTCTCTTTCTTTTTTCTTTTCTCTCTTTTTTTTATTTATTCTTTTC
TTTCTCATCATTTCTCTTTTTTTTTTTTCTATTTTTTTTCTTCTTTTCTT
TTTCATTCATTCCTCCCCTTCTTTATTTCTCCTTCTTTCTTTTCTTTCCT
TTTCTTTTTTTCTTTGTTTCTTTTTTCTTATTTTTTTTTCTTTATCTTAT
TTTCTTTTTCTATTTTTTTCCTATTTTTTCCTTCCATTTCATCCTATAAC
CTCCTTCTTTTATATTCTTCTTTCTCCTTCATTTCTTCACTTCTTTTCTT
TTTTTCTTTAACCTTCTATTTTACTATTCTTTTTCTCTATTTATATACTC
TTCCCTTTTCTTCCTTCCTTTTCTCTTCTACTTACTATTTTCTCTCCCTT
CTTATCATCTAATCCTTCTCTATACGCTTCCTTTTCACCCTTCTTATTCT
TTTTTTTCTTCCTATCTCTTTCACTTACTTCCTCCTACTCCTCTTTATCA
CTCCTCTATGACTACTCTTTCTCTTCTTCACACTCACTATTCTATCTCTC
TCCTTTCTCTTTTTTATCTTCTTCTCTTNCATCCTCTCTCTAATATTACA
TACATCTTTATTTCTTATTCTATACTCTCTTCTCCCGTCTACATTCTCAT
TATCTCTGTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_g21.b1 MSMg01no106_g21.b1 CHROMAT_FILE:
MSMg01no106_g21.b1 PHD_FILE: MSMg01no106_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:50 2005
         (270 letters)



>mm_chr16_34442720_34443389
          Length = 670

 Score =  480 bits (248), Expect = e-140
 Identities = 263/268 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatcacttcctgtagagtgctccaacgcacaggaaacagagagtcacgtcataaacagg 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 acatcacttcctgtagagtgctccagcgcacaggaaacagagagtcacgtcataaacagg 260

                                                                       
Query: 61  gctaagaacaatcaatcacaagctaccattttcagtgagcctactatgctccaggaactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctaagaacaatcaatcacaagctaccattttcagtgagcctactatgctccaggaactc 320

                                                                       
Query: 121 agctaaactgaacaaaagtatcttatctcagcaagcttgcagtactgactggttttgtgc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 agctaaactgaacaaaagtatcttatctcagcaagcttgcagtactgactagttttgtgc 380

                                                                       
Query: 181 gccaacttggcacaagctactgttatctcagagaaaggagccttggttgaggaaatgcct 240
           | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcagcttggcacaagctactgttatctcagagaaaggagccttggttgaggaaatgcct 440

                                       
Query: 241 ccatgtgtagggtattcttctcaattag 268
           |||||| |||||||||||||||||||||
Sbjct: 441 ccatgtttagggtattcttctcaattag 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no106_g21.g1 MSMg01no106_g21.g1 CHROMAT_FILE:
MSMg01no106_g21.g1 PHD_FILE: MSMg01no106_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:50 2005
         (363 letters)



>mm_chr16_34641232_34641994
          Length = 763

 Score =  694 bits (359), Expect = 0.0
 Identities = 362/363 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccttcttgctctaaaactccttgcagcggtatcttactgctggccatggagaaatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tcccttcttgctctaaaactccttgcagcggtatcttactgctggccatggagaaatgtt 504

                                                                       
Query: 61  ccacttgcccccatgtccaaagcctggtgccgtgctgtgccctagcacgtgtttaataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ccacttgcccccatgtccaaagcctggtgccgtgctgtgccctagcacgtgtttaataaa 444

                                                                       
Query: 121 tgcccctttgtcccaggattcacttcagttggtttttatttaaatatttaatgaagtgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgcccctttgtcccaggattcacttcagttggtttttatttaaatatttaatgaagtgaa 384

                                                                       
Query: 181 attgggtataagtgcctccttagggaatcttgggaaagtacagggatgtaatcaaatggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 attgggtataagtgcctccttagggaatcttgggaaagtacagggatgtaatcaaatggt 324

                                                                       
Query: 241 tcgcaaattgtacttacttatttataaccctgatttgaaaagaaggatcggagttttgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcgcaaattgtacttacttatttataaccctgatttgaaaagaaggatcggagttttgaa 264

                                                                       
Query: 301 agggggcgttcacattttacaaaaagtgtctcctatggaacgaggtatggaatcgttcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 263 agggggcgttcacattttacaaaaagtgtctcctatggaacgaggtagggaatcgttcct 204

              
Query: 361 agg 363
           |||
Sbjct: 203 agg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)