BAC Information

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BAC

Clone NameMSMg01-108A24
Chromosome16 (Build37)
Map Location 89,431,167 - 89,431,781
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2
Downstream gene5430433J05Rik, Tiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108A24.T7 (MSMg01no108_a24.b1)MSMg01-108A24.TJ (MSMg01no108_a24.g1)
ACCAG321610AG321611
length709709
length of high quality
(start - end)
672 (38 - 709)592 (70 - 661)
definitionCHROMAT_FILE: MSMg01no108_a24.b1 PHD_FILE: MSMg01no108_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:46 2005CHROMAT_FILE: MSMg01no108_a24.g1 PHD_FILE: MSMg01no108_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCA
CACTCCTGTACCTGTGAGGGATAATACGATCAGATATTCAACTTTATATT
AGAAATGAACCTTCTGGAACGGAGCTTTATCAGCCAATGATTTATAGTAA
CTCAGATCTTCCTCACACTCTAAAGAGATAGGTACATATGGGATTACATT
ATTTCAGGTTGAAGGAAATGAAAAGTCAAGTGAATTGTTTGTAGAATTGC
AGAAATATAAGGCTTGTGAAAACCACCTTCACTTCCTGTGATTCTCATCT
TTACTTGTTTTTTTTTTTTTTTGGAAGAGGAACCTAAGTTATCCTGATCT
CCAGAGGCAAAATCAGAAAGGGGGAGTGGGTACGTCAAAAGCTGTCAGTT
ACATTTGTCTTCTGTAAATGCAGGAATGTCAAAAAATGTAAGAAATGATG
TGATGTTTTAATTTAATTTATTTTTTTTGAGAATCTTAGATATGAGCACT
ATATTTACATCATTTCTATGCATTCTTCTTTCTGTGTTTCCCCACAAACT
CCAAATTTGTGACTTTTTTTATTAATTATTTTCTCTCACACATACATATG
TATAAATCCAGTCTTTTGAACCTATTTAGTGTTGTGCCATGTGTATCTGT
TTAGGACTGGTCACTTTAGATTTGGTAACCGACAGGGGTCTTATCCCCAG
GGAATGCTA
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTGTTTTTAATAGCTGAGACCAAAGTGTGG
ATACTTCAGTCCTTCTTAGAAGGGGGAACAAAATACCCATGGAAGGAGTT
ATAGAGACAAAGTGTGGAGCAGAGACTGAAGGAATACCATACAGAGGCTG
CCCCAATTGGAGATCCATTCCATATACAATCAGCAAATCCAGACACTTTT
ATGGATGTCAACAAGTGCTTGCTGACAGAAGCCTGTTATAGCTGTCTCTG
GAGAGGCTCCACCAGTGCCTGACAAATACAGAGGTGGATACTCACAGCAT
TGGACTGAGCACAGGGTCCCCAATGAAGGAGCTAAAGAAAAGACCCAAGG
AGCTAAAGGGGTTTGCAGCCCCATAGGAGGAACAGCAATATGAACTAACC
AGTACCCCCAAAGCTCCCAGGGACTAAACCACCAACCAAAGAGTATACAT
GGTGGGACTCATGGCTCCAACTGCATATGTATCAGACAATGGCCTAGTTG
GTCATCAATGGGAGGAGAGGCCCTTGATCCTGTGAAGGCTCTATGCCCCA
GTAGAGGGGAATGCCAGGGCCAGGAAGCAGAGTGGGTTGTTTGGTGAGCA
GGGGGTGGAGGGCGGAGGAAGATAGGATCTCCCCCCTCCTCCCCGTCTTC
CTTTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_a24.b1 MSMg01no108_a24.b1 CHROMAT_FILE:
MSMg01no108_a24.b1 PHD_FILE: MSMg01no108_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:46 2005
         (672 letters)



>mm_chr16_89431167_89432235
          Length = 1069

 Score = 1015 bits (525), Expect = 0.0
 Identities = 592/619 (95%), Gaps = 11/619 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattcacactcctgtacctgtgagggataatacgatcagatattcaactttatattag 65
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ggaattcacactcctgtaagtgtgagggataatacgatcagatattcaactttatattag 556

                                                                       
Query: 66  aaatgaaccttctggaacggagctttatcagccaatgatttatagtaactcagatcttcc 125
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aaatgaaccttctggaatggagctttatcagccaatgatttatagtaactcagatcttcc 496

                                                                       
Query: 126 tcacactctaaagagataggtacatatgggattacattatttcaggttgaaggaaatgaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tcacactctaaagagataggtacatatgggattacattatttcaggttgaaggaaatgaa 436

                                                                       
Query: 186 aagtcaagtgaattgtttgtagaattgcagaaatataaggcttgtgaaaaccaccttcac 245
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aagtcaagtgaattgcttgtagaattgcagaaatataaggcttgtgaaaaccaccttcac 376

                                                                       
Query: 246 ttcctgtgattctcatctttacttgtttttttttttttttggaagaggaacctaagttat 305
           ||||||||||||| || |||||||| |||||||||||   ||||||||||||||||||||
Sbjct: 375 ttcctgtgattcttatatttacttggttttttttttt---ggaagaggaacctaagttat 319

                                                                       
Query: 306 cctgatctccagaggcaaaatcagaaagggggagtgggtacgtcaaaagctgtcagttac 365
           |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 318 cctgatctccagaggcaaaatcagaatgggggagtgggtacgttaaaagctgtcagttac 259

                                                                       
Query: 366 atttgtcttctgtaaatgcaggaatgtcaaaaaatgtaagaaatgatgtgatgttttaat 425
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 258 atttgtcttctgtaaatgcaggaatgtcaaaaaatgtaagaaatgatgtgatgttt-aat 200

                                                                       
Query: 426 ttaatttattttttttgagaatcttagatatgagcactatatttacatcatttctatgca 485
           |||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 199 ttaatttaatttttttgagaatcttagatatgagcactatatttatatcattcctatgca 140

                                                                       
Query: 486 ttcttctttctgtgtttccccacaaactccaaatttgtgactt---tttttattaattat 542
           ||||||||||||||| |||||||||||||||||||||||||||   ||||||||||||||
Sbjct: 139 ttcttctttctgtgtctccccacaaactccaaatttgtgacttctttttttattaattat 80

                                                                       
Query: 543 tttctctcacacatacatatgtata----aatccagtcttttgaacctatttagtgttgt 598
           |||||||||||||||||||| ||||    ||||| ||||||||| |||||||||||||||
Sbjct: 79  tttctctcacacatacatatatatatataaatccggtcttttgagcctatttagtgttgt 20

                              
Query: 599 gccatgtgtatctgtttag 617
           |||||||||||||||||||
Sbjct: 19  gccatgtgtatctgtttag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1069
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1059
Effective search space:   701058
Effective search space used:   701058
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)