BAC Information

Click to search

BAC

Clone NameMSMg01-108L18
Chromosome16 (Build37)
Map Location 83,358,295 - 83,358,867
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665260
Downstream geneEG545172, LOC100039572, EG621729, LOC640489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108L18.T7 (MSMg01no108_l18.b1)MSMg01-108L18.TJ (MSMg01no108_l18.g1)
ACCAG322104AG322105
length676720
length of high quality
(start - end)
235 (81 - 315)569 (73 - 641)
definitionCHROMAT_FILE: MSMg01no108_l18.b1 PHD_FILE: MSMg01no108_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:41 2005CHROMAT_FILE: MSMg01no108_l18.g1 PHD_FILE: MSMg01no108_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:41 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATATAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXATCGGACCGGATCC
GCGGAATTCTTTCTTGCAAAAAAACCTCACTCAGGATGATGCCCTCCAGG
TCCATCCATTTGGCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTGA
GTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTATCCATTCCTCTG
TTGAGCGACAACTAGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCT
GTTATGAACATAGTGAGCATGTGTCCTTCTTACAAGTTGGAACATCTTCT
GGATGTTGAAGGATTTCCCTCATCCTTTTTCTTGTATGTGTTTTCCATCC
TTGTATTGTTTTTTTTTTTTCTGCTATTATCCTTTGAAGGGCTGGATTCG
TGGAAAGATAATGTGTGAATTTGGTTTTGTCGTGGAATACTTTGGTTTCT
CCATCTATAGTAATTGAAAGCTTGGCTGGGTATAGTAGCCTGGGCAGGCA
TTTGTGTTCTCTTAGGGTCTGTATAACATCTGTCCAGGATCTTCTGGCTT
TCATAGCCTCTGGTCAGAAGTCTGGTGTAATTCTGATAGGCCTGCCTTTA
TATGTTACTTGACCCTTTTCCCTTACTGCTTTTAATATTCTATCTTTTTT
TAGTGCATTTGTTGTTCTAATTATTA
ATCATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTTCAATCCAGTTGTTCCCTTCCCGCA
ACACACTCTGTTAGCCCCTGGGGCCAACACATTCACCACAGCAGCCCTCA
TGGACAGACATGGGCTTGTGGAGCCTGATACCAACAGTAAGGAACAGCAA
AAAATTATACACCCATAGGTCCTGTCTATTCTCAGGGGATGGTGCAGATG
AGTATAGGTAATTCCTTCTAGCACCTACTTATAACTTACACTTAAAACTA
CTTCATCTTTAAAGATTTTTTTCACATCATTGTCTAGATGCTACAGAAAC
TAATATAAATGATAACAAAAATGATTAACAATTTAGCATCCCATAATGAT
TTATGTATGGAATAAATATCTCTATGTCCCTAATTGATCAAAGTTGAAGA
GCAAGCTCTCAAGAATCTAACTAAGTAGGTAACTGACTACTTAACCATCT
GACTAACTAAATAAGTAAGTAAATGAATGAATGAATCAATGAATGAATGA
ATGAACCAAAAACCAGAACAAGGTTCTTTATCAGGCTCTCAACAGTGAAT
ATTAATTCTAAATATTTTGATGTAAATATTAAATTATCTAGTTCAATTTC
AACAATGAACTTCCTTTCTCATCAATAACACAGCTTTTCTATTGGAAAAA
GAAAAAAAATGGCTTCTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_l18.g1 MSMg01no108_l18.g1 CHROMAT_FILE:
MSMg01no108_l18.g1 PHD_FILE: MSMg01no108_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:41 2005
         (569 letters)



>mm_chr16_83358095_83359063
          Length = 969

 Score = 1067 bits (552), Expect = 0.0
 Identities = 567/574 (98%), Gaps = 6/574 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttc-aatccagttgttcccttcccgcaacacactctgttagcccctggggccaacaca 59
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttcaaatccagttgttcccttcccgcaacacactctgttagcccctggggccaacaca 260

                                                                       
Query: 60  ttcaccacagcagccctcatggacagacatgggcttgtggagcctgataccaacagtaag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaccacagcagccctcatggacagacatgggcttgtggagcctgataccaacagtaag 320

                                                                       
Query: 120 gaacagcaaaaaattatacacccataggtcctgtctattctcaggggatggtgcagatga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacagcaaaaaattatacacccataggtcctgtctattctcaggggatggtgcagatga 380

                                                                       
Query: 180 gtataggtaattccttctagcacctacttataacttacacttaaaactacttcatcttta 239
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtataggtaattccttctagaacctacttataacttacacttaaaactacttcatcttta 440

                                                                       
Query: 240 aagatttttttcacatcattgtctagatgctacagaaactaatataaatgataacaaaaa 299
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaga-ttttttcacatcattgtctagatgctacagaaactaatataaatgataacaaaaa 499

                                                                       
Query: 300 tgattaacaatttagcatcccataatgatttatgtatggaataaatatctctatgtccct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgattaacaatttagcatcccataatgatttatgtatggaataaatatctctatgtccct 559

                                                                       
Query: 360 aattgatcaaagttgaagagcaagctctcaagaatctaactaagtaggtaactgactact 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aattgatcaaagttgaagagcaagctctcaagaatctaactaagtaggtaactgactact 619

                                                                       
Query: 420 taaccatctgactaactaaataagtaagtaaatgaatgaatgaatcaatgaatgaatgaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 taaccatctgactaactaaataagtaagtaaatgaatgaatgaatcaatgaatgaatgaa 679

                                                                       
Query: 480 tgaa----ccaaaaaccagaacaaggttctttatcaggctctcaacagtgaatattaatt 535
           ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgaatgaaccaaaaaccagaacaaggttctttatcaggctctcaacagtgaatattaatt 739

                                             
Query: 536 ctaaatattttgatgtaaatattaaattatctag 569
           ||||||||||||||||||||||||||||||||||
Sbjct: 740 ctaaatattttgatgtaaatattaaattatctag 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)