BAC Information

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BAC

Clone NameMSMg01-109B18
Chromosome16 (Build37)
Map Location 90,791,846 - 90,792,262
singlet/doubletsinglet
Overlap gene4921511H13Rik
Upstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap
Downstream gene4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109B18.T7 (MSMg01no109_b18.b1)MSMg01-109B18.TJ (MSMg01no109_b18.g1)
ACCAG322375AG322376
length756721
length of high quality
(start - end)
185 (85 - 269)483 (88 - 570)
definitionCHROMAT_FILE: MSMg01no109_b18.b1 PHD_FILE: MSMg01no109_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:12 2005CHROMAT_FILE: MSMg01no109_b18.g1 PHD_FILE: MSMg01no109_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATAAAAAAAATCAATAATTGCGGCGCTAATACGACTACTATATTCCGAG
AACCGCGGAATTCTATGTCTGTATCCAAAACNAGAGGAAGACAGAGTGAG
ACATGGCCTGACTTGAGCATCTGAAACCCCAAAGCCCAAGCCCCACCTCC
TGTAACACACCTCCTCCAACAAGGTCACACCTCCTCCAGCAAGGCCACAC
CTCCTCCAGTAAGGCCACACCTCCTCCAACAAGGTCACACCCCTTCAACA
AGGCTACACCCACTCAAATAAGGCCACACCTACTCAAACAAGGCCACACC
TCTGAATAGTGTTACTCCCTGATTCAAGCATATTCATATCACTAGTTGTG
TTCCAGCAGAGGACGCACGCAACCATTGTTTGTGCCCGAACAATCCTATT
AAAACCACACCGATCGAATCACATTTCTTGGATTTTCCACAACCCCACCC
ATAATCCTTTACTCCATACCTTCCTTGCCCTTATTTCCCCTTCCTTTCCC
GAATTCCCTTCCTTTCCCCTATCCCTTTTTATATAGAACACCTACACCCC
CTTTTCCATCCTTTACCTTTCCCCAACCCCCCTTTTTTCCCCTTTCCCCA
CCTCCCCGCCTTTTACCCTTGCCTCCCCCTTTTCCCCCTTCGTGTTCCCT
TCCCCTTCCCCCCCCTTTCCTTTTCCACCCTTTCTTTTTTCCTCTTTTCT
CTACCCTATTTCCCATCCCCCCCTTTCCCCCTTTTCCCCCCCCCTTTCCA
TACCCC
TCTCTTTTTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTCAGGAAGCA
GGAGCTGATGCAGAGGCCATGGAGGGATGTTCCTTACTGGCTGGCTTCCC
CTGGCTTGCTCAGCCTGCTCACTTATAGAACCCAGGACTACCAGTCCAGG
GATGGCACCACCCACAAGGGGACCTCTGCACTCGATCACTAATTGAAAAA
ATGCCCCACAGCTGAATCTCATGGAGGCATTTCCTCAACTGAAACTCCTT
TCTCTGTGATAACTCCAGCTGTGTCAGGTTGACACACAAAACCAGCCAGT
ACACACAGTCATGCCTGGTATTTTGCATCCAGTGCTCTTGCTTACTGAGG
CAGCTCTGGAAATCTGAAGTTTGAAATGCTCTAAGATATGAAACTTGAAC
ATCATATTGGTGTTCAGAGAGTTGCGGATCTTGGATTTGCAGATCATACT
TAACTATAAATGAATCAAGTAGAACTATAGTAGTGGCACCTAGTGTGGCT
TAGCTTCCTCTGATTTATGGCCTTCAATTGGAGACATTTCCATGATGGTT
GGCTTCTGCCTCAGACTGGCCGTTGACCCGTGGTTTTCTTAGAGCACCTG
CGAACGTATCCTCCTAAGGCCTGTGATAAGCGCTCGCCTTGTCCGTGTAC
ACAAAAGCCGTCCTGTGCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_b18.g1 MSMg01no109_b18.g1 CHROMAT_FILE:
MSMg01no109_b18.g1 PHD_FILE: MSMg01no109_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:12 2005
         (483 letters)



>mm_chr16_90791380_90792262
          Length = 883

 Score =  746 bits (386), Expect = 0.0
 Identities = 410/418 (98%), Gaps = 1/418 (0%)
 Strand = Plus / Minus

                                                                       
Query: 66  ggcttgctcagcctgctcacttatagaacccaggactaccagtccagggatggcaccacc 125
           |||||||||||||||||| |||||| |||||||||  |||||||||||||||||||||||
Sbjct: 883 ggcttgctcagcctgctctcttataaaacccagga-aaccagtccagggatggcaccacc 825

                                                                       
Query: 126 cacaaggggacctctgcactcgatcactaattgaaaaaatgccccacagctgaatctcat 185
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 824 cacaaggggacctctgcactcgatcactaattgaaaaaatgccccacagctggatctcat 765

                                                                       
Query: 186 ggaggcatttcctcaactgaaactcctttctctgtgataactccagctgtgtcaggttga 245
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 764 ggaggcatttcctcaactgaaactcctttctctgtgataactccatctgtgtcaggttga 705

                                                                       
Query: 246 cacacaaaaccagccagtacacacagtcatgcctggtattttgcatccagtgctcttgct 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 cacacaaaaccagccagtacacacagtcatgcctggtattttgcatccagtgctcttgct 645

                                                                       
Query: 306 tactgaggcagctctggaaatctgaagtttgaaatgctctaagatatgaaacttgaacat 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tactgaggcagctctggaaatctgaagtttgaaatgctctaagatatgaaacttgaacat 585

                                                                       
Query: 366 catattggtgttcagagagttgcggatcttggatttgcagatcatacttaactataaatg 425
           |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 584 catattggtgttcagagagttgtggatcttggatttgtagatcatacttaactataaatg 525

                                                                     
Query: 426 aatcaagtagaactatagtagtggcacctagtgtggcttagcttcctctgatttatgg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aatcaagtagaactatagtagtggcacctagtgtggcttagcttcctctgatttatgg 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)