BAC Information

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BAC

Clone NameMSMg01-109I11
Chromosome16 (Build37)
Map Location 11,585,607 - 11,585,779
singlet/doubletsinglet
Overlap gene4933437K13Rik
Upstream gene4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17
Downstream geneLOC100043171, C530044N13Rik, 2700045P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109I11.T7 (MSMg01no109_i11.b1)MSMg01-109I11.TJ (MSMg01no109_i11.g1)
ACCAG322692AG322693
length808766
length of high quality
(start - end)
173 (84 - 256)120 (138 - 257)
definitionCHROMAT_FILE: MSMg01no109_i11.b1 PHD_FILE: MSMg01no109_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:47 2005CHROMAT_FILE: MSMg01no109_i11.g1 PHD_FILE: MSMg01no109_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATATTTNATTTATCATXXXXXXXXXXXXXXXXXXXXXXXCTATCCAAAGA
GGAGGCGCGGAATTCTTTATTAGCCAAAAGGAAGTTAGGAAAGAAGTCAG
TATGCCAGGAAGTAGCCTCTTTATTGGGAAGAAAGCGTGTGGTGACTTGG
GGTAAAGAAAGGGCCAAGAAGGTCTAAAGCAGACTCAGCTAAGGGTATAA
TTTTTGTCATCTCTATCTTTATGGTGATGTACGATGTAGTGGTGGCAGAA
TTGATGAAAGGAAGAACGGATCGTATTATCTGACTAACGTTGCTCTCTTT
GTTCTCTTTTGCTCCTACCACTTCCCTCTTTTTTTTCCCCCCTTCTCTTC
ACTCTTTTGTCTTTTTTATCTTTCTCTTTTCTCTTCCCCCCCACTCATCA
GTTTTCATGCCCCCTTATTCGCACTATTTTTCTTTCCCCCTCACTTCTTC
TTTACTCTAACTACCCTTATCACTATTTTCTTTATCACTCCCATTATCAA
CCCCTTCGTCTAACCCTCTCCTCTATTTCACTCCTTATCCTTCCTCCCTT
TATTTACTATTTCCTCCTCACCTTCTTTCTTTCTTTCCCCGTTGTATTTG
TTCCTTCGTCTCTTTCGTCGACCGACTTATTTATCGCTCCTTCCTACTTC
CGTCCCACCCTTCTCATCTTTACTTTCTTCCCTCCCTTTTCTTCATTCTC
TATTTCCGTCTTCCTCTTCTCCACCGCTTTTATGTTCTCATTCATTTTTT
TTTGATACCCTCTTTCTCTTCTTTTTTCCCTTTTTTCTCCCCTCCCTGCC
CTTCGCCG
TTCTTTTTACCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGGGAAAGAACTGG
AGGGGAGGGACATGGTGTCTCCAGCTAGGTGAGGAATATGGATGCAGGAA
ATCAGCTGAGGGGTGTTTGGCTTAGAACAAAGACCAGACTGAAAAGGTCT
ATGGGTAGTGTTGAATGTCTGTGTTGAGGCATGGTGACTTGAGCTCAAGG
CCAATGGTTGACTGCACAGGGGTCACAACAAAAGACTGAATAGATGACTC
AGTCTGTAAAGTACTTGCTTCTTAAGTATTTTTACCTTAACTCAAGCCCA
GAACCCATGTATAACGTTTATGTTTCACTGCCCCCCCCCTGTGCCCTCTT
ATATATGTATCTAATGATGTATCCCCCTCGTTTTCACGGCATCTGATGTA
TTCTCTCTCAGGTCTTTTATACACTATGCTCTATCTTATACCCTCCCACA
TTATCCCTGATTTTTTTGCGAATCTCCTCTCACTTCTTTGTCACTTGTCC
CTCCTTGTCCCATAACGCACTTTCTTGTCGCAATTTTTATTGTTATTTCC
TGTTTACTTTACCATTACATCTTTGTCGTGTATTTCTTGCCTTCCTTCGT
GTTTCTATTCTTTGTTCTATTTCCTTTTCTTTTTGTTCTCCTCTAATTTC
TCCTTTTAAATCATTCCCTATTTCTCACATAATTTTATCTACTGTCAACT
CTACTCCACTCCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_i11.b1 MSMg01no109_i11.b1 CHROMAT_FILE:
MSMg01no109_i11.b1 PHD_FILE: MSMg01no109_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:47 2005
         (173 letters)



>mm_chr16_11585407_11585979
          Length = 573

 Score =  281 bits (145), Expect = 2e-80
 Identities = 166/173 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttaggaaagaagtcagtatgccaggaagtagcctctttattgggaagaaagcgtgtggt 60
           ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 gttaggaaacaagtcagtatgccaggaagtagcctctttattgggaagaaagtgtgtggt 260

                                                                       
Query: 61  gacttggggtaaagaaagggccaagaaggtctaaagcagactcagctaagggtataattt 120
           |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacttggggtgaagaaagagccaagaaggtctaaagcagactcagctaagggtataattt 320

                                                                
Query: 121 ttgtcatctctatctttatggtgatgtacgatgtagtggtggcagaattgatg 173
           |||||||||||||||||||||||||||| || |||||||||| ||||||||||
Sbjct: 321 ttgtcatctctatctttatggtgatgtaggaggtagtggtggtagaattgatg 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space:    93225
Effective search space used:    93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)