BAC Information

Click to search

BAC

Clone NameMSMg01-109P13
Chromosome16 (Build37)
Map Location 61,286,493 - 61,286,617
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170, LOC100043524
Downstream geneLOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109P13.T7 (MSMg01no109_p13.b1)MSMg01-109P13.TJ (MSMg01no109_p13.g1)
ACCAG323019AG323020
length740796
length of high quality
(start - end)
250 (73 - 322)125 (77 - 201)
definitionCHROMAT_FILE: MSMg01no109_p13.b1 PHD_FILE: MSMg01no109_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:22 2005CHROMAT_FILE: MSMg01no109_p13.g1 PHD_FILE: MSMg01no109_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAGATCCGC
GGAATTCCACTAATTTACATTTGAATTGATTGTGGGTTTCCATATTGATC
ACTGTCAGTTACAAAGAGAAGTTCTTATGGGTATTTGCAATTACTACCAG
CCAAGTACATCCTAGAAAGTTAGGAAATAAGTTTATCTGGTGTTTTGATA
AAGAATGACACACACAAGTTCAAACATTTAAATGGTTGGTCATTACTTGA
GAAAGAGTAGTAGATATCGCCTTTTTGGAGAAAGAATGTCTCTAGGGCTG
GTGTTTGGGTTTCAAAAGCCCATTTTCAGGCAGAAAGTCTCTTTCTTCCT
CTTGCCTGCAGATCCAAATGCAGAACTCTCAAATAACTCTCCAGTACTCT
GTTTGCTGGCGTTCTGCTATGTTCCCCACAATGATGAAAAATGACTAAAC
CTCTGAATCTTTAAGCTAACCATCATTAAATGCTTTTTATTTTAAAGAGT
TATATGTGGTCATGTTGTCTCTTTTCAGCAGTATATAACTGACTAGTACT
CCATACATTACTTCATGTTAAAACTCAACTCTACCTGTTTTATATATGTG
ATATATGGTTTTCTTTAGGCTATAGACTTCCATGTTAGAAAATATTTAGT
GTATTATAATCTTTACTATTATTTATAATATTTCCAAGGCTTTTATCTTT
TCACATTTCTCATCTTACCTGCTATTACTTCCTTATTTTG
CCCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTTCTTTTGATTTGATTTTTAT
GAAATAGATTTGGCCACCAAGCCAGGTATCAAGCTAAGATGAACAAAGAA
TTTCCAGCTACTTTGTCCTGACTGATATAAGAACAATATCACCTATAAAC
ATTTATCCTTTTCTATGGATAGAGAAAAAGACTATTATATGCTGTATAGA
ACATATATTCGTCTTTCACAACTTTATACTACTAATATCATTTTATCTAT
TTCCATTTCACATTGAAAAATAATATTTAAAAACCCAACCTACTCGACCC
TGTGTTCCACGTTTATATTTTCCACCACCACTCCACCCCTTTACCTTATT
CATTAAGACACCATTTAGATTTATTGCATTTTTATAATATAAATATCTCT
CTTATCTCCCACCCCCCCCACACCCTCTTTATTTATTCCCCTACACGCCC
TATATTCAGACCTGCATAATACTACATTTATTTTCTTAACTACTCTAATC
ATTCACCCACTAAACAAACAATAAACCATTATCACCAACACATTATTCTA
TTTATTTTTAATCAACACCTCCCACGTCTCCCAAATTTATTATTAAATAA
CTCCCCTACCAACCCATAAACAACTATATACACAAACACAAAATATATCT
TTAAATATCCACTCAAACACTTCTTACCCCTTTACTCCTACACCACTATA
TTATCTTTTCCTTCTATCTTAACATCTTATACATCACATCTTCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_p13.g1 MSMg01no109_p13.g1 CHROMAT_FILE:
MSMg01no109_p13.g1 PHD_FILE: MSMg01no109_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:23 2005
         (125 letters)



>mm_chr16_61286293_61286817
          Length = 525

 Score =  203 bits (105), Expect = 3e-57
 Identities = 120/125 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttcttttgatttgatttttatgaaatagatttggccaccaagccaggtatcaagcta 60
           ||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 325 tatttgttttgatttgatttttatgaaatagctttggccaccaagccaggaatcaagcta 266

                                                                       
Query: 61  agatgaacaaagaatttccagctactttgtcctgactgatataagaacaatatcacctat 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 agatgaacaaagaatttccagttactttgtcctgactgatataagaacactatcacctat 206

                
Query: 121 aaaca 125
           |||||
Sbjct: 205 aaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 125
Length of database: 525
Length adjustment: 8
Effective length of query: 117
Effective length of database: 517
Effective search space:    60489
Effective search space used:    60489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)