Query= MSMg01no109_p15.b1 MSMg01no109_p15.b1 CHROMAT_FILE:
MSMg01no109_p15.b1 PHD_FILE: MSMg01no109_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:23 2005
(487 letters)
>mm_chr16_58757828_58758714
Length = 887
Score = 795 bits (411), Expect = 0.0
Identities = 453/483 (93%), Gaps = 25/483 (5%)
Strand = Plus / Minus
Query: 5 gaattcactagtcttccagcaaacagtatagaaaccactggatatccatatgaattcagt 64
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gaattcactagtcttttagcaaacagtatagaaaccactggatatccatatgaattcagt 688
Query: 65 ttaaattggatcatcgtctcataccatgtttaaaaaacaaatacaaatgagttacctagt 124
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 687 ttaaattggatcatcgtctcatagcatgtttaaaaaacaaatacaaatgagttacctagt 628
Query: 125 tagatgtaaatcctaaaacctggcagagaaaagagagagaaagcacaatgggatcacttt 184
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 627 tagatgtaaatcctaaaacctggcagagaaaagagagagaaatcacaatgggatcacttt 568
Query: 185 agataatgatttttttatgatgccaaaagcatagatgataaggattattaaaagtgcatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agataatgatttttttatgatgccaaaagcatagatgataaggattattaaaagtgcatt 508
Query: 245 aaattaaaaggcttggaaataaaaatctagtttattgtgaaaaggaacataagcaactca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aaattaaaaggcttggaaataaaaatctagtttattgtgaaaaggaacataagcaactca 448
Query: 305 atagttagaaaattaatgccgtgttatataccagcccatggacctgtataaagacagctc 364
|||||||||||||||||||| |||||||||||||||
Sbjct: 447 atagttagaaaattaatgcc-------------------------gtataaagacagctc 413
Query: 365 caagggaaggatgggagtgtccataagtgtattagtgatgtgttgatcaacaaacatcaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 caagggaaggatgggagtgtccataagtgtattagtgatgtgttgatcaacaaacatcaa 353
Query: 425 ccagggaaggtgaaaaaagacagaaaggacttaagatgtatcacaggcgagaatgacttc 484
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ccagggaaggggaaaaaagacagaaaggacttaagatgtatcacaggcgagaatgacttc 293
Query: 485 atc 487
|||
Sbjct: 292 atc 290
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no109_p15.g1 MSMg01no109_p15.g1 CHROMAT_FILE:
MSMg01no109_p15.g1 PHD_FILE: MSMg01no109_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:23 2005
(343 letters)
>mm_chr16_58623336_58624078
Length = 743
Score = 632 bits (327), Expect = 0.0
Identities = 340/345 (98%), Gaps = 3/345 (0%)
Strand = Plus / Plus
Query: 1 tttctttattatcccctgaacatatgctcatgagtttacacttcaaacagggactactca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctttattatcccctgaacatatgctcatgagtttacacttcaaacagggactactca 260
Query: 61 caccctttcaaggtcattgtgtcaactcccgagactgaccataaccctaacagattagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccctttcaaggtcattgtgtcaactcccgagactgaccataaccctaacagattagaa 320
Query: 121 gcattttcccatggtgaataaagtagttttttttttttt--aatttatttctgacttggt 178
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 gcattttcccatggtgaataaagtagttttttttttttttaaatttatttctgacttggt 380
Query: 179 agtcctttcctcattatttgcatgccctgagaacccaacacttaaagacctctcctgaag 238
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 agtcctttcctcattatttgcatgccctgagaacccaacact-aaagacctctcctgaag 439
Query: 239 cttagaaattatttttcttgcttgacttattctgttattgaggttttcaactttgtgttt 298
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cttagaaattaattttcttgcttgacttattctgttattgaggttttcaactttgtgttt 499
Query: 299 cgaaatttccttgtattgatttcttaatgctgggatttctgcttg 343
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgaaatttccttgtattgatttcttaatgctgggatttctgcttg 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space: 245156
Effective search space used: 245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
