BAC Information

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BAC

Clone NameMSMg01-110H06
Chromosome16 (Build37)
Map Location 59,020,411 - 59,020,831
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043477, Dcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183
Downstream geneOlfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884, Arl6, Epha6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110H06.T7 (MSMg01no110_h06.b1)MSMg01-110H06.TJ (MSMg01no110_h06.g1)
ACCAG323375AG323376
length708705
length of high quality
(start - end)
575 (45 - 619)421 (74 - 494)
definitionCHROMAT_FILE: MSMg01no110_h06.b1 PHD_FILE: MSMg01no110_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:02 2005CHROMAT_FILE: MSMg01no110_h06.g1 PHD_FILE: MSMg01no110_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAC
ATGCTGGCCAGGATGTGGAGAAAGAGAAACACACCTCCATTGTTGGTGGG
ATTGCAAGCTTGTACAACCACTCTGGTAATCAGTCTGGCGGTTCTTCAGA
AAACTGGATATAGTACTACCGGAGGATCCTGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATATTCCAACCAGTAAGAAGGACACATGCTCCACTATGT
TGATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCTTAGCCAAAT
GGATGGACCTGGAGGGTTTCATCCTGAGTGAGGTAACCCAATCACAAAGG
AACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACTTA
GGATACCCAAGATATAAAATACAATTTGCTAAACCCATGAAACTCAAGAA
CGAAGACC
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCAGGGAAGGAAGATTGGTGTGGTAA
GAGAATCTAATCTGTATGTTTCTGGAGTAACATGTCTGATGAATGTGTGT
AGAAAGGTGACAGTCTAATTAATGGAGATCTGCTGGGGATAGCATACAGC
TCAGGGCAGCTGGGTGTGGCCCAGAAGACTCAATGGGCTTGGAAGATGGT
TACAGTAAGTGAGTCTCACATACTCACATCTTAGTATTCAAATTCGCATT
CAGGAACAGTTCAATTAGGGAAACAAAAATGACAGAAAAACAAACCATTT
ACCTTTATTGCTAGTGTGGTGTTTGGGTTATAACAACTTTACATTTATGT
AAAGGTGACTTTTGTAAAAAAAAAAAAGATAATAAATGCCATTATTAGAT
CTAAATATTTCCTTTAAATATTTTTATTATATAACTGGATTTAACATAGG
AATGGTGACTGGGCCTAATAGAGAGTCCATCGTATCTTGATCTTTTGCTT
GTACAGATTCATGGTGAACATATTTGAAAAGAAACCCTCCCCGTATGCCT
CATCTTCATTTCTCTCTCTGCCAGTCCCTCATATAGGACTATCCCGCATC
TCAGCTTTGCCTGTGCCCCGCCACCCCTTCCCTTATCTGAATGCCGCCTC
CCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_h06.g1 MSMg01no110_h06.g1 CHROMAT_FILE:
MSMg01no110_h06.g1 PHD_FILE: MSMg01no110_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:03 2005
         (421 letters)



>mm_chr16_59020211_59021031
          Length = 821

 Score =  806 bits (417), Expect = 0.0
 Identities = 420/421 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagggaaggaagattggtgtggtaagagaatctaatctgtatgtttctggagtaacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagggaaggaagattggtgtggtaagagaatctaatctgtatgtttctggagtaacat 260

                                                                       
Query: 61  gtctgatgaatgtgtgtagaaaggtgacagtctaattaatggagatctgctggggatagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctgatgaatgtgtgtagaaaggtgacagtctaattaatggagatctgctggggatagc 320

                                                                       
Query: 121 atacagctcagggcagctgggtgtggcccagaagactcaatgggcttggaagatggttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacagctcagggcagctgggtgtggcccagaagactcaatgggcttggaagatggttac 380

                                                                       
Query: 181 agtaagtgagtctcacatactcacatcttagtattcaaattcgcattcaggaacagttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaagtgagtctcacatactcacatcttagtattcaaattcgcattcaggaacagttca 440

                                                                       
Query: 241 attagggaaacaaaaatgacagaaaaacaaaccatttacctttattgctagtgtggtgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attagggaaacaaaaatgacagaaaaacaaaccatttacctttattgctagtgtggtgtt 500

                                                                       
Query: 301 tgggttataacaactttacatttatgtaaaggtgacttttgtaaaaaaaaaaaagataat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggttataacaactttacatttatgtaaaggtgacttttgtaaaaaaaaaaaagataat 560

                                                                       
Query: 361 aaatgccattattagatctaaatatttcctttaaatatttttattatataactggattta 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 aaatgccattattagatctaaatatttcctttaaatatttttattagataactggattta 620

            
Query: 421 a 421
           |
Sbjct: 621 a 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)