Query= MSMg01no110_j20.b1 MSMg01no110_j20.b1 CHROMAT_FILE:
MSMg01no110_j20.b1 PHD_FILE: MSMg01no110_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:15 2005
(248 letters)
>mm_chr16_94754931_94755583
Length = 653
Score = 443 bits (229), Expect = e-129
Identities = 245/253 (96%), Gaps = 7/253 (2%)
Strand = Plus / Minus
Query: 1 tacagtttgtttcttttttaaaattttaacaatgtgattaactaatatttccga-agctc 59
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 452 tacagtttgtttcttttttaaaattttaacaatgtgattaactaatattt-tgacagctc 394
Query: 60 aggaatttaggcatgcgtttattaagtgcctcttttgaaaaggacacgatgccaggtata 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aggaatttaggcatgcgtttattaagtgcctcttttgaaaaggacacgatgccaggtata 334
Query: 120 aggcaatttatatgatttatatgtttggctcattagaaagaaatttaaatttcaatacca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aggcaatttatatgatttatatgtttggctcattagaaagaaatttaaatttcaatacca 274
Query: 180 cacgcc-----ccccccccccggcatacaagcacacatgtgagaaattctcagttcaaga 234
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cacgccgccccccccccccccggcatacaagcacacatgtgagaaattctcagttcaaga 214
Query: 235 aattaacaatctg 247
|||||||||||||
Sbjct: 213 aattaacaatctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 653
Length adjustment: 9
Effective length of query: 239
Effective length of database: 644
Effective search space: 153916
Effective search space used: 153916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no110_j20.g1 MSMg01no110_j20.g1 CHROMAT_FILE:
MSMg01no110_j20.g1 PHD_FILE: MSMg01no110_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:15 2005
(611 letters)
>mm_chr16_94628528_94629538
Length = 1011
Score = 1114 bits (576), Expect = 0.0
Identities = 600/608 (98%)
Strand = Plus / Plus
Query: 1 cttcttaatgccatagataggcagagtgtcaaagggagaacagaactgtaactgttggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcttaatgccatagataggcagagtgtcaaagggagaacagaactgtaactgttggtt 260
Query: 61 ttgagagacgcttctaatttaaccttaatttaaaaagacctgagaaaactcttgtaagtc 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 ttgagagacgcttctaatttaaccttaattttaaaagacctgagaaaactcttgtaagtc 320
Query: 121 attacgagttgaactgactctagttctctagaactctagaagttccagaaaaggactggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attacgagttgaactgactctagttctctagaactctagaagttccagaaaaggactggc 380
Query: 181 tagaagtgagaatcaggggcgaggaggggccgaggggaaccatctgggaaagtattatcg 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tagaagtgagaatcaggggcgaggaggggccgaggggaaccatcagggaaagtattatcg 440
Query: 241 ggggtctgttggttttgtgccagctgcgtcctctcttacagcagccatctaaacactgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggggtctgttggttttgtgccagctgcgtcctctcttacagcagccatctaaacactgta 500
Query: 301 gctgatcaacgtctagaggtaggatcccgaccttgcaccatgcccaagggatctcagatg 360
|||||||||| |||||||||||||||||||||||| | |||| |||||||||||||||||
Sbjct: 501 gctgatcaacatctagaggtaggatcccgaccttgtagcatggccaagggatctcagatg 560
Query: 361 tcaagaacagagcatccaccctgggggacaagtagtgtttagcaaggtatactatgtatt 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaagaacagagcatccacccttggggacaagtagtgtttagcaaggtatactatgtatt 620
Query: 421 agtatctctgatctaagactagacattctgtctaaaacttcttagaactcatagacaggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtatctctgatctaagactagacattctgtctaaaacttcttagaactcatagacaggt 680
Query: 481 ccctagaacatagcacaagatctgcatacacacatgccacatacacatgctactgatttc 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 ccctagaacatagcacaagatctgcatacacacatgccacatacacatgctactgacttc 740
Query: 541 ccttaatacaactgaggttctctcatggattcttgctaaaacaagtgttctcatcaaaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccttaatacaactgaggttctctcatggattcttgctaaaacaagtgttctcatcaaaat 800
Query: 601 aaatttta 608
||||||||
Sbjct: 801 aaatttta 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
