BAC Information

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BAC

Clone NameMSMg01-112P10
Chromosome16 (Build37)
Map Location 27,239,996 - 27,240,476
singlet/doubletsinglet
Overlap genenone
Upstream geneCldn1, Cldn16, LOC100043057, Il1rap, Gm606
Downstream geneOstn, Uts2d, Ccdc50, Fgf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112P10.T7 (MSMg01no112_p10.b1)MSMg01-112P10.TJ (MSMg01no112_p10.g1)
ACCAG325233AG325234
length730731
length of high quality
(start - end)
367 (46 - 412)481 (77 - 557)
definitionCHROMAT_FILE: MSMg01no112_p10.b1 PHD_FILE: MSMg01no112_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:16 2005CHROMAT_FILE: MSMg01no112_p10.g1 PHD_FILE: MSMg01no112_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGTTTATTATTTCTAGGGGATTCCTGAGTGAGGGAATGAGTGGG
TCTCTGATTCTTGTGCCTTCTCTTTGGCAATTTCCCTTCTGTTTGTTTGT
TTGTTTCTCTTCCAGCATATTAAATATTATATTTTTATATTTGTATCCCT
TAGATACCTGTCTGTTTTGTAATAAATCTAGATGGGAGGGCTGATGGGAA
GAAACTGGGAGGAATGGAGGTGAAACCATAGTCAGGATACATTATATAAG
AGAAAATTATGTTTTTTCAATAATAGGAAAAATTTTGAAATGTGACACAT
ACAAAAAAAAAACCAATCTTTTCTGAAAATGATTATTTCTGTCGAAAGAG
GTAAGGGAAATAGAGAAACAGTGATTTGTCAGAAACAACAAAACAAAGGC
TTCATTTTATTCTTAAGTTGACTTTTTCAGCACTTGACTTATCATTTTAA
AAGATGTACTAATATCCTCAAGCTTTGAATTCAACTACTCCCTGTGGTAG
AGTGTTCTCTGCTATTATAACTTAATATTGCACACTGGGAAATTTATAAC
AAGTCGAGATTATACTGAGCCCATGTTCCCACTTGCTATGAATTCATTTT
GAAAGCTGTGAATTCCCAGAATATGCATAGTACATCTCTTAAGAGCCTCA
CTTCTTCTTTGTTACATGCACTCGGAATAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTCTAGGAGGTCACACACAGTTA
CTCTGATACCTAAACTACACAAAGATTCCACATTCTCTGCCATTTTCTCC
CACAGAATTCTCCACAGAGAACTGACTGATTCTATTGTCGCTTATAGAAA
ATGATCTGTTTGGAGACATTTTGCACTATAAACATTAACTTTTCTTAGAA
AACTTTACCCATTGATTTATCATCTGAAATGAACTGTTTTCTCTTAAAAT
GCACAGGTTGATGGCTCTACCCTCTAAATATATGAAGAAGCTTAGGCAAG
CAATCTATGATGTTTGCACTGTGGCCCTCCTGGCAGCAGTGGGTTGGGGT
AAGATTTCATTCCCAAACCCATTCTTTTTGCAAATTGATGAATCCTGAGG
ACAGGAGTCAGCAAAAACTAAAGCTACCAAAAGTGACTAGCACTTTTCAC
TCTGCCATTTCCAAGATTTTTTTATTTTCTTTTCAGAGTCCTACTTTTAT
CAGATGGCAAGATGATCATTATTGGAACAACCTGTTTGAGCTTTGAGGTA
TCATTGACTTAGCAGTCAGCCATATTATTTTCCTTTGCTGAGACAGAATA
TTGTGGGCTTGATTTTACTTGGAGTTGAATCATGCCCTGTCAGCTATGTA
AGTCTTCCTTATGTGAAACACTGGGCGCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_p10.g1 MSMg01no112_p10.g1 CHROMAT_FILE:
MSMg01no112_p10.g1 PHD_FILE: MSMg01no112_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:16 2005
         (481 letters)



>mm_chr16_27239740_27240620
          Length = 881

 Score =  907 bits (469), Expect = 0.0
 Identities = 478/481 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctaggaggtcacacacagttactctgatacctaaactacacaaagattccacattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 attctaggaggtcacacacagttactctgatacctaaactacacaaagattccacattct 678

                                                                       
Query: 61  ctgccattttctcccacagaattctccacagagaactgactgattctattgtcgcttata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctgccattttctcccacagaattctccacagagaactgactgattctattgtcgcttata 618

                                                                       
Query: 121 gaaaatgatctgtttggagacattttgcactataaacattaacttttcttagaaaacttt 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaaaatgatctgtttgaagacattttgcactataaacattaacttttcttagaaaacttt 558

                                                                       
Query: 181 acccattgatttatcatctgaaatgaactgttttctcttaaaatgcacaggttgatggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acccattgatttatcatctgaaatgaactgttttctcttaaaatgcacaggttgatggct 498

                                                                       
Query: 241 ctaccctctaaatatatgaagaagcttaggcaagcaatctatgatgtttgcactgtggcc 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctaacctctaaatatatgaagaagcttaggcaagcaatctatgatgtttgcactgtggcc 438

                                                                       
Query: 301 ctcctggcagcagtgggttggggtaagatttcattcccaaacccattctttttgcaaatt 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 437 ctcctggcagcagtgggttggggtaagatttcattcccaaatccattctttttgcaaatt 378

                                                                       
Query: 361 gatgaatcctgaggacaggagtcagcaaaaactaaagctaccaaaagtgactagcacttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gatgaatcctgaggacaggagtcagcaaaaactaaagctaccaaaagtgactagcacttt 318

                                                                       
Query: 421 tcactctgccatttccaagatttttttattttcttttcagagtcctacttttatcagatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcactctgccatttccaagatttttttattttcttttcagagtcctacttttatcagatg 258

            
Query: 481 g 481
           |
Sbjct: 257 g 257


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)