Query= MSMg01no113_b10.b1 MSMg01no113_b10.b1 CHROMAT_FILE:
MSMg01no113_b10.b1 PHD_FILE: MSMg01no113_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:25 2005
(388 letters)
>mm_chr16_30142289_30143074
Length = 786
Score = 712 bits (368), Expect = 0.0
Identities = 378/382 (98%), Gaps = 2/382 (0%)
Strand = Plus / Plus
Query: 6 gaattcattagcttccgtttctgttatcgctggagagtagtgggcactggggtgatgggg 65
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcattagcttctgtttctgttatcgctggagagtagtgggcactggggtgatgggg 265
Query: 66 tccaccccgacccattatccaacaatgccaaagggcaagtagagaccttcagacaaggac 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tccaccccgacccattatccaacaatgccaaagggcaagtagagaccttcagacaaggac 325
Query: 126 caggcagaagcaatggaaaccagaactctgtaaaggagaaaagacctcaggcagagctcc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 caggcagaagcaatggaaaccagaactctgtaaaggagaaaagacctcaggcagagctcc 385
Query: 186 agtgacatcactagattctccaaagctgaaacaggatgtcagagcttatacaacatctca 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agtgacatcactagattctccaaagctgaaacaggatgtcagagcttatacaacatctca 445
Query: 246 gatagaatgagcttactttgagcaatggagattggggggtgggggggggctgaaaggaaa 305
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 446 gatagaatgagcttactttgagcaatggagattggggggtggggggg--ctgaaaggaaa 503
Query: 306 aatgctccaatcaaagtcactcagctttgcagaagcagggccagcaccgactcccagtgt 365
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aatgctccaatcaaagtcactcagctttgcagaagcagggccagcaccgactcccagtgc 563
Query: 366 atgtttcttactggatcaggcg 387
||||||||||||||||||||||
Sbjct: 564 atgtttcttactggatcaggcg 585
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 786
Length adjustment: 9
Effective length of query: 379
Effective length of database: 777
Effective search space: 294483
Effective search space used: 294483
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_b10.g1 MSMg01no113_b10.g1 CHROMAT_FILE:
MSMg01no113_b10.g1 PHD_FILE: MSMg01no113_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:25 2005
(604 letters)
>mm_chr16_30306960_30307963
Length = 1004
Score = 1083 bits (560), Expect = 0.0
Identities = 593/604 (98%)
Strand = Plus / Minus
Query: 1 tgtccgttcctctttgttgtctcattttgagtcggttctgctctggggctgttgggaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgtccgttcctctttgttgtctcattttgagtcggttctgctctggggctgttgggaaag 745
Query: 61 gcagtggtctctgatccagagacgaatttcggggccagccgcctctgtgctagactgagc 120
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 744 gcagtggtctctgatacagagacgaatttcggggccagccacctctgtgctagactgagc 685
Query: 121 taggacacacaggaactcctcccatccacagcccagtgacagcagccactttgcagcacc 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 684 taggacacacaggaactcctcccatccacagcccagcgacagcagccactttgcagcacc 625
Query: 181 cactcctgacccgactaaaatgactgttgtcgtggaggtgggatgggaactcctgtgtgt 240
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 624 ccctcctgacccgactaaaatgactgttgtcgcggaggtgggatgggaactcctgtgtgt 565
Query: 241 tgtagctcagctcagagggggcttgctttgaaaccgaggctcctcgggaaccagagcctg 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 564 tgtagctcagctcagagggggcttgctctgaaaccgaggctcctcgggaaccagagcctg 505
Query: 301 gccgagggggttctagaactcatctggagaagccctgtgctggcaagcttggggacctgc 360
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 504 gccgagggggttctagaattcatctggagaagccctgtgctggcaagcttgaggacctgc 445
Query: 361 tctttgtgtctgtcccactggcctcctgggagtttccatacgtcatgtgtttcccatttc 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 444 tctttgtgtctgtcccactggcctcctgggagtttccatacgtcatgtttttcccatttc 385
Query: 421 ccataggtgacggccacatcatttcacaagcatttatggagctgtgaccatgggacaggt 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccataggtgacagccacatcatttcacaagcatttatggagctgtgaccatgggacaggt 325
Query: 481 gttcatgactgtaatgacagcttggtttccagtggacagcgcttgtatcacgttctcatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttcatgactgtaatgacagcttggtttccagtggacagcgcttgtatcacgttctcatt 265
Query: 541 tatccttccgatagaaaacaattaaacccttgttgcagtaattggctgcctgtgcttatg 600
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tatccttccaatagaaaacaattaaacccttgttgcagtaattggctgcctgtgcttatg 205
Query: 601 agag 604
||||
Sbjct: 204 agag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
