BAC Information

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BAC

Clone NameMSMg01-113C12
Chromosome16 (Build37)
Map Location 58,743,107 - 58,743,265
singlet/doubletsinglet
Overlap genenone
Upstream geneCol8a1, LOC435480, LOC629342, LOC100043477, Dcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1
Downstream geneOlfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884, Arl6, Epha6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113C12.T7 (MSMg01no113_c12.b1)MSMg01-113C12.TJ (MSMg01no113_c12.g1)
ACCAG325375AG325376
length675682
length of high quality
(start - end)
91 (73 - 163)159 (172 - 330)
definitionCHROMAT_FILE: MSMg01no113_c12.b1 PHD_FILE: MSMg01no113_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:30 2005CHROMAT_FILE: MSMg01no113_c12.g1 PHD_FILE: MSMg01no113_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATCAAAATTTGGGCGCTATACGACTCCTTTTTCAAAAGGGGCGNGGA
ATCTTAGTTTGCTCAAAACCNGTTTTTTAATGGGGTTATTTGATTTTCTG
GAGTCCACCTTCTTGACCCCTTTATATATATTGCATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTATAGAAGCTTTGCAGATTCATTTGT
TTATTCTCGAACATACAGCAGGGGGCATTGAAAAACAAGTGGGGAATTTT
TACCCTGGGCCCATACCTANCTTGCTTTTCTCCACTTTCTCCTCTATAAG
TTTCATTGTCTCTGACTTTGTGTGAAGTTCCTTGATTCACTTAGATTTGA
TCTTACAACAAGGAGACAAGAATGGGGCGATTCACATACTTCTGCGTGTT
GACAACCAGGGGTGACAACACCATTTGTGTGGAAAGCTGTCGTTGTTGGA
CTGGATGGTTTTAGCAACCGTGACGGGGATCAAGTGAACATGGGAATCAA
CATACAAAACAGGGTCTACAATTCTATTTGCTTGGTCTACCTGCCATACA
TTATACCACCCCCCGGCAGTTTTTATCACAATTGCTCTGCACGTAAGCTT
TATTTCAGGGGTGAGAGAAAAACCT
ACAATGCTGTGAGTAGCCTGACGACCGCCTGGTTTCCGAATTTAGGCGAC
CTATAGAACGTTCCCCGGAATTCCACGAAGGGCAGATCCGGGTACGGAAG
TACCAGCGTGGAACAGCGACCATTTTCAACTTTGCATGATGTGCTGGGAG
CAATGAATCATACGCACGCCATTGCTTACAGGTGCAGTCTGTTTAATACT
CTATCTGATAAGGAATAATTCTACCCATGTGAAATAAAGAAAAACTGATT
GAGATTAAAAGTCCACGGTATTCTATTAGAGAAAAATCACTGGATGTTGT
GAAGCACGACTTTATATAGAGAGAGTTGTGAATCTACATGGAGCTAATTC
TTTATAAACTCAAAATTAGCCTGAAAAGAAGAACAATAAAAAACAACTTT
TTGCCTCCTTTGTCATCAGTAGGATAAAATAGGCGTAAGATTGTGAATTT
TTGAGCTGCTCTACCCAAAAAATTGATAAAAAAATAATAACTTAGGGAAT
TGTTATTTAATTTGTCTTGCAGATTGGGTATACAGCGTATGGATACTTGG
ACCCGAAAGTCGAGAAAAACATTAGTCAGCGGGGGCGTAGGGTATAGAAA
CTACAATACCTCATTAGACGTGAGCTGAGTGTGAAATGTGGGGAATTCTC
TACTGGTTGTGGAAAACAGCACCTGAATGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_c12.g1 MSMg01no113_c12.g1 CHROMAT_FILE:
MSMg01no113_c12.g1 PHD_FILE: MSMg01no113_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:30 2005
         (159 letters)



>mm_chr16_58742906_58743465
          Length = 560

 Score =  261 bits (135), Expect = 1e-74
 Identities = 153/159 (96%), Gaps = 1/159 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   tgcttacaggtgcagtctgtttaatactctatctgataaggaataattctacccatgtga 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 360 tgcttacaggtgcagtctgtttaatactctatctgataaggaataattctaaccatgtga 301

                                                                       
Query: 62  aataaagaaaaactgattgagattaaaagtccacggtattctattagagaaaaa-tcact 120
           |||||||||||||||||||||||||||| |||||  |||||||||||| ||||| |||||
Sbjct: 300 aataaagaaaaactgattgagattaaaaatccacaatattctattagaaaaaaaatcact 241

                                                  
Query: 121 ggatgttgtgaagcacgactttatatagagagagttgtg 159
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ggatgttgtgaagcacgactttatatagagagagttgtg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 560
Length adjustment: 8
Effective length of query: 151
Effective length of database: 552
Effective search space:    83352
Effective search space used:    83352
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)