Query= MSMg01no113_p20.b1 MSMg01no113_p20.b1 CHROMAT_FILE:
MSMg01no113_p20.b1 PHD_FILE: MSMg01no113_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:35 2005
(198 letters)
>mm_chr16_28514859_28515455
Length = 597
Score = 286 bits (148), Expect = 5e-82
Identities = 180/196 (91%), Gaps = 13/196 (6%)
Strand = Plus / Minus
Query: 5 gaattcagttgcagtcgccagttgtgtggtgtccagggctgagagttgggggcttcttag 64
||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 363 gaattcagttgcagt-gtcagttgtgtggtgtccagggttgagagttgggggcttcttag 305
Query: 65 gaaagagaggttagttatatggtaccttacgattgcaagacacagattagtgatttccat 124
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gaaagagaggttagttatatagtaccttacgattgcaagacacagattagtgatttccat 245
Query: 125 aaacaaaacacattccagtcagactaacatttcataggaacatccttcttttcc--cccc 182
|||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 244 aaacaaaacacattccagtcagactaacatttcataggaa--------ttttccctcccc 193
Query: 183 tccc-tccccttcccc 197
|||| |||||| ||||
Sbjct: 192 tcccctcccct-cccc 178
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 597
Length adjustment: 8
Effective length of query: 190
Effective length of database: 589
Effective search space: 111910
Effective search space used: 111910
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no113_p20.g1 MSMg01no113_p20.g1 CHROMAT_FILE:
MSMg01no113_p20.g1 PHD_FILE: MSMg01no113_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:35 2005
(575 letters)
>mm_chr16_28385503_28386477
Length = 975
Score = 1085 bits (561), Expect = 0.0
Identities = 571/575 (99%), Gaps = 2/575 (0%)
Strand = Plus / Plus
Query: 1 aatgaacagcacaggttgtcagtccacaagatcaatggacgaggcgaagcatccaagagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgaacagcacaggttgtcagtccacaagatcaatggacgaggcgaagcatccaagagt 260
Query: 61 cttttcacgctgtagagctttcacaattatatctcccacaaatcttccactctatgctgc 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttcacgctgtagagcttttacaattatatctcccacaaatcttccactctatgctgc 320
Query: 121 agccatattgaaattatttcctgttaggcttactcattaatgcagtgtgcctattccaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccatattgaaattatttcctgttaggcttactcattaatgcagtgtgcctattccaga 380
Query: 181 cactgagcaacttaggacagagtggtgaaaaagaaaggtgtgacccttgttattgtgaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactgagcaacttaggacagagtggtgaaaaagaaaggtgtgacccttgttattgtgaca 440
Query: 241 gttagtttgaaatatcataaaaatattataaattaattccatctgtgttctgtgtgtcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttagtttgaaatatcataaaaatattataaattaattccatctgtgttctgtgtgtcca 500
Query: 301 tctttagaaaccagaaagaaagttgatgtgtaaaaatgtagatttcccaggatcataaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctttagaaaccagaaagaaagttgatgtgtaaaaatgtagatttcccaggatcataaag 560
Query: 361 gcagccaacaaatgagctgatttgaaatctaaatcccagggctccagtgagactgttatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcagccaacaaatgagctgatttgaaatctaaatcccagggctccagtgagactgttatt 620
Query: 421 cttaaataagagacacgttaagcaattcgaatcctaatagttataaaaataatgaggaaa 480
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 cttaaataagagacacgttaagcaattagaatcctaatagttataaaaataatgaggaaa 680
Query: 481 acagacaatagtagcaatattagaagtgtgaaatactcctgaaatactctacctatccaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acagacaatagtagcaatattagaagtgtgaaatactcctgaaatactctacctatccaa 740
Query: 541 atataatttatttcctatgtacaattgcatagaga 575
|||||||||||||||||| |||||||||||||||
Sbjct: 741 atataatttatttcctat--acaattgcatagaga 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
