BAC Information

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BAC

Clone NameMSMg01-114A04
Chromosome16 (Build37)
Map Location 84,307,700 - 84,308,237
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545172, LOC100039572, EG621729, LOC640489
Downstream geneLOC665664, LOC547311, LOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114A04.T7 (MSMg01no114_a04.b1)MSMg01-114A04.TJ (MSMg01no114_a04.g1)
ACCAG325998AG325999
length705711
length of high quality
(start - end)
544 (38 - 581)542 (75 - 616)
definitionCHROMAT_FILE: MSMg01no114_a04.b1 PHD_FILE: MSMg01no114_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:36 2005CHROMAT_FILE: MSMg01no114_a04.g1 PHD_FILE: MSMg01no114_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:36 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AAATTTGCGGCGCTAAACGACTCCTATTTCGAGAGATCCGCGGAATTCAT
TAATCCTCCTATAATATCTGTCATTCCACATTTACCACTAGGTTTTAAAA
CTGGCCAAATTGAACTGTTGAAATAGAAGCTTTGAGTTAGTTCAATTACT
CCTTCCTTTAGTATGGCTTTAATGGTTTCAGATATCTCCCCACTTCCTCC
TTTAACTGGGTATTATGGCATAAATGCGTGTTTAACTGTTGGTAGCCTTA
TAGGTTCTATTTTTACTCCTGATAGATTACATTTAAAATTTAGGAAATTG
GGGAAAATGTTTAAGATCATTGGGAAGCTTAAAATATTTTCCGCTTCACT
GCAACATGCAAAATCCAAGGGGATTATTTGATCATATACCATTAATTCTA
ATTTACATACTAGTACTATGAATTCTTCAGGCCTTCCTTGTATAATTATT
TTTTTCTTTCTTGGTATAGTGTCTGGTAGTCCTGCATAAATATTAACATT
ACTGCTAGTGCCATCTTATCAATTTTTAGGGGCAACATGATATATGGTCT
TATTGGAGAAGACTTGATTCTTGTTGAAAGGTCTTCTCATAGTTGGGTGC
TGGTTGTTCCTTTGTACAGGTAGCCTTCTGTTCCCTAAAAATGGCTTAGG
TTAATTCCTTCAACAACCCTATTTGGGATATACTTCTGTGTGGTTCTGTT
TATAA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATG
AATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGAT
CATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGG
ATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGG
TCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCAAGAAT
TTTATTAAGGAGTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGT
TCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTG
GCTTCATAAAATGAGTTGGGTAGAGTACTTTCTACTTCTATCTTGTGAAA
AAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACT
CTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGCGACTATTT
ATAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAAGTCAAC
TTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCA
TTTCGTCCAGGTTTTCCAGCTTTGTTGAGTATAGCCTTTTGTAGAAGGAT
CTGATGGCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_a04.b1 MSMg01no114_a04.b1 CHROMAT_FILE:
MSMg01no114_a04.b1 PHD_FILE: MSMg01no114_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:36 2005
         (544 letters)



>mm_chr16_84307495_84308437
          Length = 943

 Score =  988 bits (511), Expect = 0.0
 Identities = 532/539 (98%), Gaps = 1/539 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcattaatcctcctataatatctgtcattccacatttaccactaggttttaaaact 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gaattcattaatcctcctataatatctgtcattccacatttaccactaggttttaaaact 684

                                                                       
Query: 66  ggccaaattgaactgttgaaatagaagctttgagttagttcaattactccttcctttagt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ggccaaattgaactgttgaaatagaagctttgagttagttcaattactccttcctttagt 624

                                                                       
Query: 126 atggctttaatggtttcagatatctccccacttcctcctttaactgggtattatggcata 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atggctttaatggtttcagatatctccccacttcctcctttaactgggtattatggcata 564

                                                                       
Query: 186 aatgcgtgtttaactgttggtagccttataggttctatttttactcctgatagattacat 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aatgcgtgtttaactgttggtagccttataggttctatttttactcctgatagattacat 504

                                                                       
Query: 246 ttaaaatttaggaaattggggaaaatgtttaagatcattgggaagcttaaaatattttcc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 503 ttaaaatttaggaaattggggaaaatgtttaagatcattgggaagcttaaaatattttct 444

                                                                       
Query: 306 gcttcactgcaacatgcaaaatccaaggggattatttgatcatataccattaattctaat 365
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 443 gcttcactgcaacatgcaaaatccaaggggattatttgatcatatacaattaattctaat 384

                                                                       
Query: 366 ttacatactagtactatgaattcttcaggccttccttgtataattatttttttctttctt 425
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 383 ttacatactagtactatgaattcttcaggccttccttgtataattattttttcctttctt 324

                                                                       
Query: 426 ggtatagtgtctggtagtcctgcataaatattaacattactgctagtgccatcttatcaa 485
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggtatagtgtctggtagtcctgcgtaaatattaacattactgctagtgccatcttatcaa 264

                                                                      
Query: 486 tttttaggggcaacatgatatatggtcttattggagaagacttgattcttgttgaaagg 544
           |||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 263 tttt-aggggcaacctgatatatggtcttattggagatgacttgattcttgttgaaagg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 943
Length adjustment: 10
Effective length of query: 534
Effective length of database: 933
Effective search space:   498222
Effective search space used:   498222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)