Query= MSMg01no114_f17.b1 MSMg01no114_f17.b1 CHROMAT_FILE:
MSMg01no114_f17.b1 PHD_FILE: MSMg01no114_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:01 2005
(483 letters)
>mm_chr16_59769491_59770373
Length = 883
Score = 820 bits (424), Expect = 0.0
Identities = 466/480 (97%), Gaps = 2/480 (0%)
Strand = Plus / Minus
Query: 5 gaattcttccccagttctagatgttacataccc-agaaggtgtagactggcttgtgttgt 63
|||||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 683 gaattcttccccagctctagatgttacgtaccctagaaggtgtaggctggcttgtgttgt 624
Query: 64 ttgaaacaatacccctattaggggtatttatattcccagaccgttcctctgtgattctta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttgaaacaatacccctattaggggtatttatattcccagaccgttcctctgtgattctta 564
Query: 124 agaactaaaatcaagaagaggcggtgactcagtggttgcaataccctccaacgagctatc 183
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 563 agaactaaaatcaagaagaggcggtgactcagtggttgcaataccctctaacgagctatc 504
Query: 184 tacaccgacaaagactgtaggcgagaacagatacatagctacatggagacagaacccaga 243
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 503 tacaccgacaaagactgtaggcgagaacagatacacagctacatggagacagaacccaga 444
Query: 244 ataaccaacttcagcatataatagagctcctatctctgcagacataaagagtgaacgatg 303
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 443 ataaccaactgcagcatataatagagctcatatctctgcagacataaagagtgaacgatg 384
Query: 304 cagtttaaaaggaacttcttgtaataaccaatgcttccaggaaagcacttaaaccctgaa 363
|||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct: 383 cagtttaaaaggaacttc-agtaatagcaaatgcttccaggaaagcacttaaaccctgaa 325
Query: 364 ctaaaatacatcaagcctctgctaagagaccttgggacttggtaatgatagggacaccat 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 324 ctaaaatacatcaagcctctgctaagagaccttgggacttggtaatgatagggacaacat 265
Query: 424 gaattgtgcaatgtaggccaaagatagaagaaaataagtgacacataaatagtgtcttga 483
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 264 gaattgtgcaatgtaggccaaagatagaagaaaataagtgacacagaaatagtgtcttga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no114_f17.g1 MSMg01no114_f17.g1 CHROMAT_FILE:
MSMg01no114_f17.g1 PHD_FILE: MSMg01no114_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:02 2005
(589 letters)
>mm_chr16_59655910_59656895
Length = 986
Score = 1031 bits (533), Expect = 0.0
Identities = 580/610 (95%), Gaps = 24/610 (3%)
Strand = Plus / Plus
Query: 1 cagaacagacagtccatgtctgaagctgtgttaggagagttctgagagcttgtgagcaaa 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 cagaacacacagtccatgtctgaagctgtgttaggagagttctgagagcttgtgagcaaa 239
Query: 61 ctgcaaggaaacaagagtctttgtggcctctttcct---------------------ggc 99
|||||||||||||||||||||||||||||||||||| |||
Sbjct: 240 ctgcaaggaaacaagagtctttgtggcctctttcctccacgtcgtggatctattccaggc 299
Query: 100 cctccctggtgtagtaataggagtggtttactttagattatccatcatctgacccattgt 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cctccctggtgtagtaataggagtggtttactttagattatccatcatctgacccattgt 359
Query: 160 tattcggaataatgttgactgtaaaagcctacagtcatgtgacctggtccttgtgaccgt 219
|||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct: 360 tattcggaataatgttgactgtaaaagcctacagtc--gt-acctggtccttgtgactgt 416
Query: 220 atacaacctgaattcaagtgaacttggctcacatgcttagcactcagaataccctcagaa 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 atacaacctgaattcaagtgaacttggctcacatgcttagcactcagaataccctcagaa 476
Query: 280 tagaagctgtctgatgccctgaataaagatggctattgcacgatacttttgtctgcctca 339
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 477 tagaagctgtctgatgccctgaataaagttggctattgcacgatacttttgtctgcctca 536
Query: 340 atctgaggttccactctcccaggtccatcccaccaaatagagcagcaacacggaaacata 399
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atctgagattccactctcccaggtccatcccaccaaatagagcagcaacacggaaacata 596
Query: 400 gaactattgtggtgtttgtaaaaatatttggtaggaaaagtgtttatataataatagatg 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gaactattgtggtgtttgtaaaaatatttggtaggaaaagtgtttatataataatagatg 656
Query: 460 cattatgataaatgtgtcatttaaacaggttttagatacaaaacttacattatctagtan 519
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 cattataataaatgtgtcatttaaacaggttttagatacaaaacttacattatctagtaa 716
Query: 520 agtactaatgctctttaaaatatacttatgatttgattcaaatcaatatttattaaataa 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 agtactaatgctctttaaaatatacttatgatttgattcaaatcaatatttattaaataa 776
Query: 580 taaaaaatgt 589
||||||||||
Sbjct: 777 taaaaaatgt 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 986
Length adjustment: 10
Effective length of query: 579
Effective length of database: 976
Effective search space: 565104
Effective search space used: 565104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
