BAC Information

Click to search

BAC

Clone NameMSMg01-114L16
Chromosome16 (Build37)
Map Location 54,907,076 - 54,907,674
singlet/doubletsinglet
Overlap geneLOC667927
Upstream geneLOC433027, LOC100043442, LOC100043449
Downstream geneLOC436421, Zpld1, Nfkbiz, Gm1752, Lrriq2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114L16.T7 (MSMg01no114_l16.b1)MSMg01-114L16.TJ (MSMg01no114_l16.g1)
ACCAG326539AG326540
length7041,775
length of high quality
(start - end)
614 (45 - 658)---
definitionCHROMAT_FILE: MSMg01no114_l16.b1 PHD_FILE: MSMg01no114_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:29 2005CHROMAT_FILE: MSMg01no114_l16.g1 PHD_FILE: MSMg01no114_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACGGGAAGGACTTTTTTTTTCTATTTCACCTTTTTACTAAGTAGGG
AAATATTTTATTAAGTAAACTGAGTGGGAAAAAAAAGACTGAGTTTAAGA
GGCTAAGGTCAGAAATAAGCAACATAGCAAGACCAGGTCTTAATATGAAA
AACAAAAACAAAAACAAAAACAAAAACAAAAACAACAAAGCAGCAAATGA
GACCCAAGGAACAAGTGAGTATGACAGCCATGAATGTGAATGCCATGATC
TCCATAGAGAATCTGTATGCCTAGTGATCTCTACAATATAATTGCATAAG
AAAATCGAGTGAATTCTAACTTTCTCTAGGCAAGTTGTAGAAGAAGTCTA
CTCAAAATACAAGATACAAACTAATCAGTCTGAAAAGATTAATAAAACTC
TCAAAAATCAGTGTTACTTCAATGACCTTATTTTCCAATTGCAAAAGAAC
AAAATCAAGCTATTTGAACTTCACCAAGAGAGATAAGTAAACAAATAAAG
AGAATGAACAGTGCGTGCTAATTTTTTGCAGCCTTGCAAGCTTTGGGGTT
GAATCTAAGCTCTCTTGGCATAATATTCAATGATGCAAGCGGAATTAAAA
TTATTCCTCTCGTACAATCATAAATAGCTTGATAAATCTGTAAGCCGTTT
CCCT
GAGTTATTAGCTCCGCGTTACGCACTCTATCTACCATACGAGGTGCCATT
CACTCTCGTGATACCTGCTACACATGTATCTCCTTCTTATAAAGTAAATC
GACGTATATTAGGTNNTAACGAGGATATGAGGTCGCGATTGCGCGCGCTC
ACAAGAGAACGCTACGTGTGAGAAAGCCATAACGTCCGACTATATCGCGC
GCTCGCGGTGCCATTATCGTGTCTCTCATCTCAACNCGTAATATTACATG
TGCATAATGCTTGCGTTATTTATTATATAGTCTTCACGCGCCGTTATCTA
GTGTGCTAAGCAATACGATGAATAATATCTGGACTGCGCGGGCGCATATG
AAGATATATGAGTGTAGGCATATAAGAAACAACACGTCACGTACGTGCGA
CTCNGCGNCCGACAATACGGGCGTAATTCTTCTATACCCGTTATTGATCG
CGCGACACATTGAACGACGAGCAGTTACCGCCGTTTTATATATATTGCTG
CGGTATAAAGTAACGTGTACGANGAGACGGCTCATTGCGGCGCGCACATA
GATATAGTTCGCGCGNGTATAATAATCGCTGCGCCTGTGTACATCGCCGC
CTGATAGAGTATAGACGCTCACGCGCGTCTAAACATGCGGGGCAATATTA
TCTGCACAGTGTAACCGCGACATGCACGATTAGTAGAATCATCTGCGTCG
CGGATCGTGTGGTATCGCCGTACATATANGCGATAATGTGTATCATCTGA
CGCGCTAACCACATAATTANCTGCGCTGCTGTGCCTCGTTATATACACGC
GGCCGCACACGCACGCGTCTCGCGATACATGCGCGCATAAGAGAGCTGTN
TNTAATAATTCGCGATTGTNTCGGCGCGCTCGTTATCGTTATCACCCCGT
TATATTTATCGGTATATTCGAATATTATACGCCCGCGCGTCGTCGTAACT
ATAGCGATCTATATAATGGCGCGCGGTGGCACATAGAACGTAATATCATC
ACTACACGCGCGCGTGTCACTCTATTTACGACATACGCGCGCTGANCTCC
GTCGTCGTCCGCTCGATACACGACATTTTTACGCGCGACGCGCGCGCTAT
TATCTTAACTGCATTCGGCGCTATACGCCGCATTCGCGCGGCATAATATA
TCGCTGACNCATATGCGCTATGTCGCTGCCGAATGATACATAATTTCATA
CCGATGACAACGCGCATCTATAAGCGCCGAAGATNCGTGCGCAATACCGT
CTACGACGACAAATAGTATCTAATCACAACGCGCGCGGTGGTCTCCGCAT
ATTGTGGTATGTGCTCATACGTCACGTCAGCGCCTGGCGACCACAGATGC
GACATACGAATATATAACATACATACACGCCGCGATGTATCGCGTTNGAT
GCTACTGANTATAATCCAACTGCCGCCGTCTGGTGTTCACGCATATANAG
TACTAGCGCCGCGCTCGCTGATTAGACTCTGTCTGCTGTATGATATGCTG
CGACACACTCTATCTANACTACATATGTTGTCGTCCCACAGACACAATCA
CGGATCGCGCTAATCAGCACACTGTGCGTTCGATACGATATATGTGCTGT
GTATTCTGACAANACGCGTGATAACTCTGCTAGCGCGACTAGTGACATGT
AGTTTAGAGCGGAGTGGTGCGTGACAATCAGATATAGGGCNGCGCGATAG
TACANTATNATATAGGCGCGCAGTACTACGCGAACATTACTNTCCGTCGT
GTNGCGCAGCTCATATGATTATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_l16.b1 MSMg01no114_l16.b1 CHROMAT_FILE:
MSMg01no114_l16.b1 PHD_FILE: MSMg01no114_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:29 2005
         (614 letters)



>mm_chr16_54906872_54907886
          Length = 1015

 Score = 1093 bits (565), Expect = 0.0
 Identities = 594/611 (97%), Gaps = 13/611 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacgggaaggactttttttttctatttcacctttttactaagtagggaaatattt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacgggaaggactttttttttctatttcacctttttactaagtagggaaatattt 264

                                                                       
Query: 65  tattaagtaaactgagtgggaaaaaaaa-gactgagtttaagaggctaaggtcagaaata 123
           |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 265 tattaagtaaactgagtgggaaaaaaaaagactgagtttaagagtctaaggtcagaaata 324

                                                                       
Query: 124 agcaacatagcaagaccaggtcttaatatgaaaaacaaaaacaaaaacaaaaacaaaaac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 325 agcaacatagcaagaccaggtcttaatatgaaaaacaaaaacaaaaacaaaaacaa---- 380

                                                                       
Query: 184 aaaaacaacaaagcagcaaatgagacccaaggaacaagtgagtatgacagccatgaatgt 243
                   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 --------caaagcagcaaatgagacccaaggaacaagtgagtatgacagccatgaatgt 432

                                                                       
Query: 244 gaatgccatgatctccatagagaatctgtatgcctagtgatctctacaatataattgcat 303
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 433 gaatgccatgatctccatagagaatctgtatgcctagtgatctctacagtataattgcat 492

                                                                       
Query: 304 aagaaaatcgagtgaattctaactttctctaggcaagttgtagaagaagtctactcaaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aagaaaatcgagtgaattctaactttctctaggcaagttgtagaagaagtctactcaaaa 552

                                                                       
Query: 364 tacaagatacaaactaatcagtctgaaaagattaataaaactctcaaaaatcagtgttac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tacaagatacaaactaatcagtctgaaaagattaataaaactctcaaaaatcagtgttac 612

                                                                       
Query: 424 ttcaatgaccttattttccaattgcaaaagaacaaaatcaagctatttgaacttcaccaa 483
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttcaatgaccttattttccaagtgcaaaagaacaaaatcaagctatttgaacttcaccaa 672

                                                                       
Query: 484 gagagataagtaaacaaataaagagaatgaacagtgcgtgctaattttttgcagccttgc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gagagataagtaaacaaataaagagaatgaacagtgcgtgctaattttttgcagccttgc 732

                                                                       
Query: 544 aagctttggggttgaatctaagctctcttggcataatattcaatgatgcaagcggaatta 603
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 733 aagctttggggttgaatctaagctctcttggcataaaattcaatgatgcaagcggaatta 792

                      
Query: 604 aaattattcct 614
           |||||||||||
Sbjct: 793 aaattattcct 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1015
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1005
Effective search space:   607020
Effective search space used:   607020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)