Query= MSMg01no115_a23.b1 MSMg01no115_a23.b1 CHROMAT_FILE:
MSMg01no115_a23.b1 PHD_FILE: MSMg01no115_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:54 2005
(438 letters)
>mm_chr16_31942113_31942950
Length = 838
Score = 777 bits (402), Expect = 0.0
Identities = 429/446 (96%), Gaps = 14/446 (3%)
Strand = Plus / Plus
Query: 5 gaattcacatttttctcaccttcccggtgatgtttatgaaatgccagccctttccatgtt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatttttctcaccttcccggtgatgtttatgaaatgccagccctttccatgtt 264
Query: 65 cccctgcttgggccaacagaacgacggtttccctcaggatgtgactgacagaatgaaagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccctgcttgggccaacagaacgacggtttccctcaggatgtgactgacagaatgaaagt 324
Query: 125 cgtaggctgcttagtgtaggctcaggaagacggggctcctcccttaagaccatgtttatt 184
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 cataggctgcttagtgtaggctcaggaagatggggctcctcccttaagaccatgtttatt 384
Query: 185 agtcacacatatacacttttattctttatttttcttctcttcttggtttttttttttttt 244
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 agtcacacatatacacttttattctttatttttcttctcttcttgttttttttttttttt 444
Query: 245 ttttttttttt------------agacagggctctctatgaagcctgggctgtcctgcag 292
||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttttttttttttttttttttttagacagggctctctatgaagcctgggctgtcctgcag 504
Query: 293 ctatgtagaccaggctaacctcaaactcagtaagattatcctacctctgcctcctgagtc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctatgtagaccaggctaacctcaaactcagtaagattatcctacctctgcctcctgagtc 564
Query: 353 ctgcaattaaagattaaagatttgcaaccaccatccaggctcaccctctttttttttttt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgcaattaaagattaaagatttgcaaccaccatccaggctcaccctctttttttttttt 624
Query: 413 tttaagatttatttatttatttcatg 438
| |||||||||||||||||||||||
Sbjct: 625 t--aagatttatttatttatttcatg 648
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_a23.g1 MSMg01no115_a23.g1 CHROMAT_FILE:
MSMg01no115_a23.g1 PHD_FILE: MSMg01no115_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:54 2005
(531 letters)
>mm_chr16_32047985_32048915
Length = 931
Score = 882 bits (456), Expect = 0.0
Identities = 485/496 (97%), Gaps = 7/496 (1%)
Strand = Plus / Minus
Query: 10 ttctagctcattctgccaagtgctgggatcgcaagacactaggctcaacttcagatgagg 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttctagctcattctgccaagtgctgggatcgcaagacactaggctcaacttcagatgagg 439
Query: 70 ctgttcttcacagtgacttcagttaggtgacatggagaaaaaggcagtggccttaagatt 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctgttcttcacagtgacttcagttaggtgacatggagaaaaaggcagtggccttaagatt 379
Query: 130 tcatgtcaacatgtggcttgggattttactgcctcttcctactactgccgttttgttatt 189
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 378 tcatgtcaacatgtgacttgggattttactgcctcttcctactgctgccgttttgttatt 319
Query: 190 aaataggtttcagaagtgattcaagaattttccatggtctatgacaagcaaacgtggaaa 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaataggtttcagaagtgattcaagaattttccatggtctatgacaagcaaacgtggaaa 259
Query: 250 atggacttacattttaaaacatgaatatatttcgtcactaaatctagggtttcttcctcc 309
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atggacttacatttttaaacatgaatatatttcgtcactaaatctagggtttcttcctcc 199
Query: 310 tcctcttctttttctcttttgtttt-tttt-tttt-ttttttttcgagactggatttctc 366
||||||||||||||||||||||||| |||| |||| |||||||||||||||| |||||||
Sbjct: 198 tcctcttctttttctcttttgttttgttttgttttgttttttttcgagactgaatttctc 139
Query: 367 tgtgtagccctggctgccctggaactcactctgtagaccaggctggccttgaactcagaa 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tgtgtagccctggctgccctggaactcactctgtagaccaggctggccttgaactcagaa 79
Query: 427 atcccaagtgctgggactaaaggctaaaggcatgtgccaccaccacc---cggcttctct 483
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 78 atcccaagtgctgggactaaaggctaaaggcatgtgccaccaccaccacccggcttctct 19
Query: 484 tttttt-aaaaaaaaa 498
|||||| |||||||||
Sbjct: 18 tttttttaaaaaaaaa 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
