BAC Information

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BAC

Clone NameMSMg01-115P15
Chromosome16 (Build37)
Map Location 43,754,445 - 43,935,772
singlet/doubletdoublet
Overlap geneDrd3, Qtrtd1, 2610015P09Rik
Upstream geneBC002163, LOC667484, Zbtb20, LOC100043314
Downstream geneZdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115P15.T7 (MSMg01no115_p15.b1)MSMg01-115P15.TJ (MSMg01no115_p15.g1)
ACCAG327473AG327474
length787719
length of high quality
(start - end)		350 (45 - 394)424 (80 - 503)
definitionCHROMAT_FILE: MSMg01no115_p15.b1 PHD_FILE: MSMg01no115_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:04 2005CHROMAT_FILE: MSMg01no115_p15.g1 PHD_FILE: MSMg01no115_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,935,426 - 43,935,772)(43,754,445 - 43,754,868)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGTGTGAACCATGCTGCCCAGGACCAACACCTCTAATGGTGCTTT
TGGTGAGAAGTGTGCCATTGGAACCTCCAAGTCAGGAGAGCACCAAGCAG
ACTGGGGAGAGTTGGCAAGTGGCCAACTACCGCTAAGCTTCAGATTCACC
CTTAGAAACGGGGCTGAGAACTCTACACTGCCTAGCCTCCAAATGGTTTT
TGTTTTTTTTTTTTTCATTTTTTGTTACTTATATAAAACAAACTGTAAAA
ATACCAAATGAAATCCATAATAGAGTAATAATGCTATCTTACAGCAAGAC
GATTGAATATCTAAACCATGCTGCAATTTTTCCGTTGTTCTAGGCAGGCC
TTACACAGTGGCCCCCCCCCCGGACAGAGGAAAACTTGCCGGAGTCTGCT
CTTTTCCCCACCATGCGCGTCCCTGCGCATTGAACCCTTCTAAAGGCACC
GCCCGCCGCTCTCCCCCCCCCCCCCCGGCCCCGCCTGACTTCCCCTAATT
CCCCGTTTTAACCTTTCTCCCTCGCCCCCCCCCGTCCTCTGACCTGATCT
ACCCCTATCCTTATTCCCCCACCCGCCCCCCCTACTGTTTTCCCTCCTCT
CTACCTCTTTTCCACCCCCTCCACCTCCCTTTTTTATTCCCTCCCCCGCT
GCTCCCCCCCCCATTTTCCCCTCGCCCTCATCCGCCCCCTTATTCTCCCC
TCTTCTTTTCCTCCCCCCATCCTACCGCCCGTCCCCG

NNNNNCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGTTCTCTGAGCTGCTCT
AGGTTTAAAACATGAAACCCTGAGGAAACTGTGTTCATTAAGTGGCTGGA
CCTGCTTGCTCTCTTTTTAATCCCCCCTCTCTCAAATTTGTGTCACGATG
GGCTCTAGAATCTATATCAAGGCATACATAAAAGACATTAAATAAAAACC
TGTTTTTATTTCCTGGGAGTTGCACAGAAGTCGACTGCATTCCTCTTACG
GGTTTGACTTAATCGTCAGAGTCTGTTATTTTGAACTACCCACTTCAGCA
CCCTGGTAGTGCAGGGCCGAGGGGTTTAGAGAGACACCGTTTTCAATCTG
TTTAAAGTCAAGCTGCTTCCCACCCAGAATTCAATTATCCCAACAGAGAT
ATGTGAGGATGGCTGTGTATGTTTTTTGCCAGAGATGCTATATGATTTTT
GAAGGCCTTGTTGCTCACTCGCACCATTTCCACTGTTTATTGTCGCTTAC
CGCTTCTTCTCACTTCCTGTTTATTCCTGCTCCCTCGTCTCTGCTCGCTT
TTCCTTTTCTCTTTATTTTTCTCTCCCCCCCAATCATCCCCCCTTCTTCC
TTTCCCCCCTCCCCTTATTTCCTCCTTCTTCCCCCCCCCCTTTGTCTCTC
CCCCTCCTTTCTTTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_p15.b1 MSMg01no115_p15.b1 CHROMAT_FILE:
MSMg01no115_p15.b1 PHD_FILE: MSMg01no115_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:04 2005
         (350 letters)



>mm_chr16_43935223_43935972
          Length = 750

 Score =  663 bits (343), Expect = 0.0
 Identities = 346/347 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccagtgtgaaccatgctgcccaggaccaacacctctaatggtgcttttggtgag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ggaattccagtgtgaaccatgctgcccaggaccaacacctctaatggtgcttttggtgag 491

                                                                       
Query: 64  aagtgtgccattggaacctccaagtcaggagagcaccaagcagactggggagagttggca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aagtgtgccattggaacctccaagtcaggagagcaccaagcagactggggagagttggca 431

                                                                       
Query: 124 agtggccaactaccgctaagcttcagattcacccttagaaacggggctgagaactctaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 agtggccaactaccgctaagcttcagattcacccttagaaacggggctgagaactctaca 371

                                                                       
Query: 184 ctgcctagcctccaaatggtttttgtttttttttttttcattttttgttacttatataaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctgcctagcctccaaatggtttttgtttttttttttttcattttttgttacttatataaa 311

                                                                       
Query: 244 acaaactgtaaaaataccaaatgaaatccataatagagtaataatgctatcttacagcaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 acaaactgtaaaaataccaaatgaaatccataatagagtaataatgctatcttacagcaa 251

                                                          
Query: 304 gacgattgaatatctaaaccatgctgcaatttttccgttgttctagg 350
           |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 250 gacgattgaatatctaaaccatgctgtaatttttccgttgttctagg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no115_p15.g1 MSMg01no115_p15.g1 CHROMAT_FILE:
MSMg01no115_p15.g1 PHD_FILE: MSMg01no115_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:04 2005
         (424 letters)



>mm_chr16_43754245_43755068
          Length = 824

 Score =  789 bits (408), Expect = 0.0
 Identities = 420/424 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtggttctctgagctgctctaggtttaaaacatgaaaccctgaggaaactgtgttcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtggttctctgagctgctctaggtttaaaacatgaaaccctgaggaaactgtgttcatt 260

                                                                       
Query: 61  aagtggctggacctgcttgctctctttttaatcccccctctctcaaatttgtgtcacgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtggctggacctgcttgctctctttttaatcccccctctctcaaatttgtgtcacgat 320

                                                                       
Query: 121 gggctctagaatctatatcaaggcatacataaaagacattaaataaaaacctgtttttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggctctagaatctatatcaaggcatacataaaagacattaaataaaaacctgtttttat 380

                                                                       
Query: 181 ttcctgggagttgcacagaagtcgactgcattcctcttacgggtttgacttaatcgtcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcctgggagttgcacagaagtcgactgcattcctcttacgggtttgacttaatcgtcag 440

                                                                       
Query: 241 agtctgttattttgaactacccacttcagcaccctggtagtgcagggccgaggggtttag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtctgttattttgaactacccacttcagcaccctggtagtgcagggccgaggggtttag 500

                                                                       
Query: 301 agagacaccgttttcaatctgtttaaagtcaagctgcttcccacccagaattcaattatc 360
           ||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||
Sbjct: 501 agagacaccgttttcaatctgtttaaagtcaagctgcttccaagtcagaattcaattatc 560

                                                                       
Query: 361 ccaacagagatatgtgaggatggctgtgtatgttttttgccagagatgctatatgatttt 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 ccaacagagatatgtgaggatggctgtgtatgttttttgccagagatggtatatgatttt 620

               
Query: 421 tgaa 424
           ||||
Sbjct: 621 tgaa 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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