BAC Information

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BAC

Clone NameMSMg01-116L16
Chromosome16 (Build37)
Map Location 27,540,046 - 27,540,345
singlet/doubletsinglet
Overlap genenone
Upstream geneIl1rap, Gm606, Ostn, Uts2d, Ccdc50
Downstream geneFgf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116L16.T7 (MSMg01no116_l16.b1)MSMg01-116L16.TJ (MSMg01no116_l16.g1)
ACCAG328038AG328039
length712716
length of high quality
(start - end)
461 (80 - 540)300 (80 - 379)
definitionCHROMAT_FILE: MSMg01no116_l16.b1 PHD_FILE: MSMg01no116_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:04 2005CHROMAT_FILE: MSMg01no116_l16.g1 PHD_FILE: MSMg01no116_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCTCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAGAGGATCCGC
GGAATTCCTCTGGTTACCACAACAAGTACATGTTGAATAGGTAGGGCGAG
AGTGGGCAGCCTTGTCTAGTCCCTGATTTTAGTGGGATTGCTTCCAGCTT
CTCACCATTTACTTTGATGTTGGCTAGTGGTTTGCTGTAGATTGCTTTTA
TCATGTTTAGGTATGGGCCTTGAATTCCTGATCTTTCCAAGACTTTTATC
ATGAATGCGTGTTGGATTTGTCAAATGTTTCTCAGCATCTAAGGGGATGA
CCATATGTTTTTGTCTTTCGTTTGTGTATATAGTGGATTACATTGATGGA
TTTCCGTATATTATACCATCCCTCCATCCCTGGAATAAAACCTACTTGGT
CAGCATGGATGATTGTTTTGATGTGTTCTTGGATTCGGTTAGTGAGAATT
TTATTGAGGATTTTTGCATCCATATTCATAAGGGAAATTGGTCTGAAGTT
CTCTATCTTTGTTGGGTCTTTTTGTGGTTTAGGTATCAGAGTAGTTGTGG
CATCAGAGAATGAGTTGGGTACAGTACCTTCTGCTTCTATTTTGTGGAAC
AGTTTGTGAAGAACTGGAATTAGATCTCCTTTTGAAGTCTGATAGAACTC
TGCACTATACCCTTCTGGTCCTGGGCTTTTTTTTTTGTTGTTGGGAGACT
ATTAATGACCGA
NNNNTTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGATGTCTTACACGGTATT
CCCCTACGCTAACATTATTGTCCTTACTTCCTTATTCTTTGGTTCCAAGA
GAAGGGGATAAAAACTGATAGCACTTGGTAGTCATGATTTTTTTAGACAT
GCACATTAAGTTGCTATTCAAAAATGTTAAGTATTCTTTAAAAATTAGTC
TTTGAAAATGTCATGCATGTAAACAACATATCTTGATCACACGGACTCGC
CATTTTCTCCTCCATCTATCTCTAGGACCTCCATTCAATCTCATTAGCAG
TTTCATGGTCTCCCTTTTATATTGTTAATAAGTATGTTCATTTTTAACCA
CATTGGTCCAATTATTGTTGCCCATGTGCACATGGCAGTGTGTTTATCCA
CTGGGGCATGAGGAACCTACAAGTTGTCACTCTCTAGCTTCCTCTAACTA
CAAATATCTTCTGACACTGGCGGAACATTGGTCATTCCTCCACACACTAT
GCTAAAATTTTAACAGACTTGTTCTTGTGCCGGTCTTGCGAAGATAACCA
TAGTTGTCATGTGTCTATGTGTGTAAAAGCTACATTATGTAAAGAGGACC
GAATTTTGCTCTTATATTCTTTTCACATACCTCTTGTGAAGATTCCCAAG
CCTTAGAAGAGGTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_l16.g1 MSMg01no116_l16.g1 CHROMAT_FILE:
MSMg01no116_l16.g1 PHD_FILE: MSMg01no116_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:04 2005
         (300 letters)



>mm_chr16_27539846_27540545
          Length = 700

 Score =  565 bits (292), Expect = e-165
 Identities = 298/300 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgatgtcttacacggtattcccctacgctaacattattgtccttacttccttattctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgatgtcttacacggtattcccctacgctaacattattgtccttacttccttattctt 260

                                                                       
Query: 61  tggttccaagagaaggggataaaaactgatagcacttggtagtcatgatttttttagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggttccaagagaaggggataaaaactgatagcacttggtagtcatgatttttttagaca 320

                                                                       
Query: 121 tgcacattaagttgctattcaaaaatgttaagtattctttaaaaattagtctttgaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcacattaagttgctattcaaaaatgttaagtattctttaaaaattagtctttgaaaat 380

                                                                       
Query: 181 gtcatgcatgtaaacaacatatcttgatcacacggactcgccattttctcctccatctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcatgcatgtaaacaacatatcttgatcacacggactcgccattttctcctccatctat 440

                                                                       
Query: 241 ctctaggacctccattcaatctcattagcagtttcatggtctcccttttatattgttaat 300
           ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 441 ctctaggacctccattcaatctcattaacagtttcatggtctcccttttagattgttaat 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)