Query= MSMg01no116_l23.b1 MSMg01no116_l23.b1 CHROMAT_FILE:
MSMg01no116_l23.b1 PHD_FILE: MSMg01no116_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:05 2005
(520 letters)
>mm_chr16_91837258_91838178
Length = 921
Score = 920 bits (476), Expect = 0.0
Identities = 508/522 (97%), Gaps = 9/522 (1%)
Strand = Plus / Minus
Query: 4 gaattccaaatagttctc-c---gccacgaagtacaaggtcgcaaacagattcccacagt 59
||||||||||||| | | ||||| |||||||||||||||||||||||||||||||
Sbjct: 740 gaattccaaatag----cacaaagccacaaagtacaaggtcgcaaacagattcccacagt 685
Query: 60 gaccacagaacattacatggaaaaggtacaaaacagacacaaacagccaaacagaacaga 119
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 684 gaccacagaacactacatggaaaaggtacaaaacaggcacaaacagccaaacagaacaga 625
Query: 120 cagagtgattgtcttccaggcagtggcggcgatctccaccttttgtatccagtttaattt 179
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 624 cagagtgattgtcttccaggcagtagcggcgatctccaccttttgtatccagtttaattt 565
Query: 180 gcagttgcagtaaacaagagaggaggcagagaggcgtttggggtgctctggggaagcttg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcagttgcagtaaacaagagaggaggcagagaggcgtttggggtgctctggggaagcttg 505
Query: 240 tggcagtagac-gggggctttgctttccagccttgcacttataccatcactggtattagg 298
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 504 tggcagtagactgggggctttgctttccagccttgcacttagaccatcactggtattagg 445
Query: 299 aggctgtgaactggaaatctctttggtcattggcatgcaaatgaactaaccaagtgtccc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggctgtgaactggaaatctctttggtcattggcatgcaaatgaactaaccaagtgtccc 385
Query: 359 aattttcctgtctacttccattgtctacacaggagagcactgggaaccaaccaaacactt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aattttcctgtctacttccattgtctacacaggagagcactgggaaccaaccaaacactt 325
Query: 419 cagggggcgtgtacgcgcatatgcagagatttaaatgcgtctgtttgcccacacacatta 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagggggcgtgtacgcgcatatgcagagatttaaatgcgtctgtttgcccacacacatta 265
Query: 479 aggaaggcaggcatctttcctggtacagtaaccgtctgagaa 520
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aggaaggcaggcatctttcctggtacagtaaccgtctgagaa 223
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 921
Length adjustment: 10
Effective length of query: 510
Effective length of database: 911
Effective search space: 464610
Effective search space used: 464610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_l23.g1 MSMg01no116_l23.g1 CHROMAT_FILE:
MSMg01no116_l23.g1 PHD_FILE: MSMg01no116_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:05 2005
(234 letters)
>mm_chr16_91707342_91707975
Length = 634
Score = 445 bits (230), Expect = e-129
Identities = 233/234 (99%)
Strand = Plus / Plus
Query: 1 aaaattaaaacaagaagcttaaggggaagtctgtgagtgaactcctttcctgggagatac 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 aaaattaaaacaagaagcttaaggggaagtctgtgagtgaactcatttcctgggagatac 260
Query: 61 gttcatgtaaactctgtacagtgaagttgatgtaaaggtggccgatgtcatgcagcagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcatgtaaactctgtacagtgaagttgatgtaaaggtggccgatgtcatgcagcagac 320
Query: 121 ctggagtgctggggtccctgagcctccttcccccagtatgccctgaacagaaccctgcgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggagtgctggggtccctgagcctccttcccccagtatgccctgaacagaaccctgcgt 380
Query: 181 ttctggaggctactcaagttctaagtctgctctcttacaaaaggaaacgtaggc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctggaggctactcaagttctaagtctgctctcttacaaaaggaaacgtaggc 434
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
