BAC Information

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BAC

Clone NameMSMg01-116M12
Chromosome16 (Build37)
Map Location 35,985,083 - 36,078,405
singlet/doubletdoublet
Overlap geneKpna1, Wdr5b, 2310056P07Rik, Ccdc58
Upstream geneMylk, Ptplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9
Downstream geneCsta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116M12.T7 (MSMg01no116_m12.b1)MSMg01-116M12.TJ (MSMg01no116_m12.g1)
ACCAG328078AG328079
length718717
length of high quality
(start - end)		599 (78 - 676)531 (77 - 607)
definitionCHROMAT_FILE: MSMg01no116_m12.b1 PHD_FILE: MSMg01no116_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:08 2005CHROMAT_FILE: MSMg01no116_m12.g1 PHD_FILE: MSMg01no116_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,985,083 - 35,985,681)(36,078,029 - 36,078,405)
sequence
CCCCNCCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTACATAGATCACGCTGCCACTGAACTCAGAGATCCACC
TGCCTCTGCTCTTGGAATTCTGAAATTAAAGACGTGTGTTGTCACACCTG
ACCTCCTTTCTCCATTTTAAAGGCTGAAAGGTCTAAATTTTGAAAGGAAC
TTGAGAATGGTTTAGCTTTTTAGTTTTGCTGAAATAACTTATTCTTGGCG
GATTATCGTTTATGTGATATACAATTTTAAGATGGAGGCCTGAGAAGAAG
TAAAGAAATAAAAGCAAATTTACAGCAACTTTGAAGCAGATATTAGCTTT
TCCTAGCATAAATGAAAGCACGGAAGAACACAGTATTAGTTTTAAAAATA
GCTTGTTTTGGGCTGGTGAGATGGGTCAGTGGGTAAGAGCACTGACTGCT
CTTCCAAAGGCCTTGAGTTCAAATCTCAGCAACCACATGGTGGTTCACAA
CCACCTGTAATGAGGTCTGACACCGGTGCCTTTCTGGTGCGTCTGAAGTC
AGCTACAGTGTACTTATGTATAGTAACAAATATTTTTAAAAAAAAGAATA
GCTTGTTTCTTATAAATATTTTATTTCCTTTTTAAGTGTGTGAATGTTTG
TAAGTGCATCATGATGGTGCCTGGTGCTTGCAGAGGCCATATGAAGGTGT
TAGAGTCTCTTAAAGTGA

TTTTCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCCCGAAATACATGCTTGGTGTTGTAACCCTGATC
AAGAAACCATGCTGAACAGGTCATAGGCCCTCCTATGGAGACCTACTACT
GTTGTTTGCTAACAGACATGTCGTCAAGATGCTTCTGAAATACGTATGCT
TGTACCCACAGATCAGTGCTGCTGTCAGTCTTCATCAGAGGCTTCTTTCG
CATGGATGGCAGTTAATGCAAATTCATAACTGGTCCAAGTGCTGAGAAGT
GACTATTGGTTGCTTGGCCCTAAAATCTCTATCAGTCACACCAAGGCTCA
GGCACCACAGAGAAGATGGTGGGAAGAATGTAAAAACCCACGGGTGGAGA
GGGGTGCAGCAAGACAAAGTCTCTGGACATCATCAAGACAGAAAAGAGCA
AGAAAAGAAGAGCTCAGAGGAAGAGGATGATGATGAATGTGTGTTCCGAG
TGCTCTTTTCTTGTCAATAAAGCATTTAACCTCCTGTGTAAAACTCATTC
CTTTTAAGGAGAAACAGTGAAATGTGAAACTGTGAGATTTGTTTTTAAGA
CTTTAGAGGTAGCTCAGTGGTTAAAAGCATTGGCTGCTCTTCCAGAGGAT
CCAGATTTGATTCTCAGCATCTACATAATGGCTCACAACCATCAGAAACT
CCAGTTCCAGGGGACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_m12.b1 MSMg01no116_m12.b1 CHROMAT_FILE:
MSMg01no116_m12.b1 PHD_FILE: MSMg01no116_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:08 2005
         (599 letters)



>mm_chr16_35984883_35985881
          Length = 999

 Score = 1158 bits (599), Expect = 0.0
 Identities = 599/599 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccactgaactcagagatccacctgcctctgctcttggaattctgaaattaaagacgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccactgaactcagagatccacctgcctctgctcttggaattctgaaattaaagacgtgt 260

                                                                       
Query: 61  gttgtcacacctgacctcctttctccattttaaaggctgaaaggtctaaattttgaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgtcacacctgacctcctttctccattttaaaggctgaaaggtctaaattttgaaagg 320

                                                                       
Query: 121 aacttgagaatggtttagctttttagttttgctgaaataacttattcttggcggattatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacttgagaatggtttagctttttagttttgctgaaataacttattcttggcggattatc 380

                                                                       
Query: 181 gtttatgtgatatacaattttaagatggaggcctgagaagaagtaaagaaataaaagcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttatgtgatatacaattttaagatggaggcctgagaagaagtaaagaaataaaagcaa 440

                                                                       
Query: 241 atttacagcaactttgaagcagatattagcttttcctagcataaatgaaagcacggaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttacagcaactttgaagcagatattagcttttcctagcataaatgaaagcacggaaga 500

                                                                       
Query: 301 acacagtattagttttaaaaatagcttgttttgggctggtgagatgggtcagtgggtaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acacagtattagttttaaaaatagcttgttttgggctggtgagatgggtcagtgggtaag 560

                                                                       
Query: 361 agcactgactgctcttccaaaggccttgagttcaaatctcagcaaccacatggtggttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcactgactgctcttccaaaggccttgagttcaaatctcagcaaccacatggtggttca 620

                                                                       
Query: 421 caaccacctgtaatgaggtctgacaccggtgcctttctggtgcgtctgaagtcagctaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaccacctgtaatgaggtctgacaccggtgcctttctggtgcgtctgaagtcagctaca 680

                                                                       
Query: 481 gtgtacttatgtatagtaacaaatatttttaaaaaaaagaatagcttgtttcttataaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgtacttatgtatagtaacaaatatttttaaaaaaaagaatagcttgtttcttataaat 740

                                                                      
Query: 541 attttatttcctttttaagtgtgtgaatgtttgtaagtgcatcatgatggtgcctggtg 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attttatttcctttttaagtgtgtgaatgtttgtaagtgcatcatgatggtgcctggtg 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no116_m12.g1 MSMg01no116_m12.g1 CHROMAT_FILE:
MSMg01no116_m12.g1 PHD_FILE: MSMg01no116_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:08 2005
         (531 letters)



>mm_chr16_36077475_36078405
          Length = 931

 Score =  706 bits (365), Expect = 0.0
 Identities = 374/377 (99%)
 Strand = Plus / Minus

                                                                       
Query: 155 ttcatcagaggcttctttcgcatggatggcagttaatgcaaattcataactggtccaagt 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 ttcatcagaggcttctttcgcatggatggcagttaatgcaaattcataactggtccaagt 872

                                                                       
Query: 215 gctgagaagtgactattggttgcttggccctaaaatctctatcagtcacaccaaggctca 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 gctgagaagtgactattggttgcttggccctaaaatctctatcagtcacaccaaggctca 812

                                                                       
Query: 275 ggcaccacagagaagatggtgggaagaatgtaaaaacccacgggtggagaggggtgcagc 334
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 811 ggcaccacagagaagatggggggaagaatgtaaaaacccacgggtggagaggggcgcagc 752

                                                                       
Query: 335 aagacaaagtctctggacatcatcaagacagaaaagagcaagaaaagaagagctcagagg 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aagacaaagtctctggacatcatcaagacagaaaagagcaagaaaagaagagctcagagg 692

                                                                       
Query: 395 aagaggatgatgatgaatgtgtgttccgagtgctcttttcttgtcaataaagcatttaac 454
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 691 aagaggatgatgatgaatgtgtgttccgagtggtcttttcttgtcaataaagcatttaac 632

                                                                       
Query: 455 ctcctgtgtaaaactcattccttttaaggagaaacagtgaaatgtgaaactgtgagattt 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ctcctgtgtaaaactcattccttttaaggagaaacagtgaaatgtgaaactgtgagattt 572

                            
Query: 515 gtttttaagactttaga 531
           |||||||||||||||||
Sbjct: 571 gtttttaagactttaga 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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