BAC Information

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BAC

Clone NameMSMg01-116O14
Chromosome16 (Build37)
Map Location 27,540,046 - 27,540,340
singlet/doubletsinglet
Overlap genenone
Upstream geneIl1rap, Gm606, Ostn, Uts2d, Ccdc50
Downstream geneFgf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116O14.T7 (MSMg01no116_o14.b1)MSMg01-116O14.TJ (MSMg01no116_o14.g1)
ACCAG328176AG328177
length704703
length of high quality
(start - end)
570 (55 - 624)295 (82 - 376)
definitionCHROMAT_FILE: MSMg01no116_o14.b1 PHD_FILE: MSMg01no116_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:18 2005CHROMAT_FILE: MSMg01no116_o14.g1 PHD_FILE: MSMg01no116_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGNNNGCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCTCTGTCTCGGACTTCAAGACAATGTTGAATAGGTA
GGGCGAGAGTGGGCAGCCTTGTCTAGTCCCTGATTTTAGTGGGATTGCTT
CCAGCTTCTCACCATTTACTTTGATGTTGGCTAGTGGTTTGCTGTAGATT
GCTTTTATCATGTTTAGGTATGGGCCTTGAATTCCTGATCTTTCCAAGAC
TTTTATCATGAATGCGTGTTGGATTTGTCAAATGTTTCTCAGCATCTAAG
GGGATGACCATATGTTTTTGTCTTTCGTTTGCTTATATAGTGGATTACAT
TGATGGATTTCCGTATATTAAACCATCCCTCCATCCCTGGAATAAAACCT
ACTTGGTCAGCATGGATGATTGTTTTGATGTGTTCTTGGATTCGGTTAGT
GAGAATTTTATTGAGGATTTTTGCATCAATATTCATAAGGGAAATTGGTC
TGAAGTTCTCTATCTTTGTTGGGTCTTTTTGTGGTTTAGGTATCAGAGTA
ATTGTGGCATCAGAGAATGAGTTGGGTACAGTACCTTCTGCTTCTATTTT
GTGGAACAGTTTGTGAAGAACTGGAATTAGATCTCCTTTGAAGGTCTGAT
AGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTTTTGTTGTTG
CGAG
TCCTTTTCTCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGATGTCTTACACGGTA
TTCCCCTACGCTAACATTATTGTCCTTACTTCCTTATTCTTTGGTTCCAA
GAGAAGGGGATAAAAACTGATAGCACTTGGTAGTCATGATTTTTTTAGAC
ATGCACATTAAGTTGCTATTCAAAAATGTTAAGTATTCTTTAAAAATTAG
TCTTTGAAAATGTCATGCATGTAAACAACATATCTTGATCACACGGACTC
GCCATTTTCTCCTCCATCTATCTCTAGGACCTCCATTCAATCTCATTAGC
AGTTTCATGGTCTCCCTTTTAGATTGTTAACAAGTATGTTCATTTTTAAC
CACATTGGTCCAATTATTGTTGCCCATGTGCACATGGCAGTGTGTTTATC
CACTGGGGCATGAGGAACCTACAAGTTGTCACTCTCTAGCTTCCTCTAAC
TACAAATATCTTCTGACACTGGTGGAACATTGGTCATTCCTCCACACACT
ATGCTAAAATTTTAACAGACTTGTCCTTGTGCAGGTCTTGCGAAGATAAC
CATCGTTGTCATGTGCTTATGTGTGTAAAAGCTACATTATGTAAAGAGGA
CAGAATTTTGCTCTTATATTCTTTTCACATTACCTCTTGTGATGATTCCT
AAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_o14.g1 MSMg01no116_o14.g1 CHROMAT_FILE:
MSMg01no116_o14.g1 PHD_FILE: MSMg01no116_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:18 2005
         (295 letters)



>mm_chr16_27539846_27540540
          Length = 695

 Score =  563 bits (291), Expect = e-165
 Identities = 294/295 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgatgtcttacacggtattcccctacgctaacattattgtccttacttccttattctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgatgtcttacacggtattcccctacgctaacattattgtccttacttccttattctt 260

                                                                       
Query: 61  tggttccaagagaaggggataaaaactgatagcacttggtagtcatgatttttttagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggttccaagagaaggggataaaaactgatagcacttggtagtcatgatttttttagaca 320

                                                                       
Query: 121 tgcacattaagttgctattcaaaaatgttaagtattctttaaaaattagtctttgaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcacattaagttgctattcaaaaatgttaagtattctttaaaaattagtctttgaaaat 380

                                                                       
Query: 181 gtcatgcatgtaaacaacatatcttgatcacacggactcgccattttctcctccatctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcatgcatgtaaacaacatatcttgatcacacggactcgccattttctcctccatctat 440

                                                                  
Query: 241 ctctaggacctccattcaatctcattagcagtttcatggtctcccttttagattg 295
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 ctctaggacctccattcaatctcattaacagtttcatggtctcccttttagattg 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)